Publications

Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases. 2011-10-01; 11.7: 1586-94.
Intra-genotypic diversity of archival G4P[8] human rotaviruses from Washington, DC
McDonald SM, Davis K, McAllen JK, Spiro DJ, Patton JT
PMID: 21712102
Plant biotechnology journal. 2011-10-01; 9.8: 922-31.
Large-scale transcriptome analysis in chickpea (Cicer arietinum L.), an orphan legume crop of the semi-arid tropics of Asia and Africa
Hiremath PJ, Farmer A, Cannon SB, Woodward J, Kudapa H, Tuteja R, Kumar A, Bhanuprakash A, Mulaosmanovic B, Gujaria N, Krishnamurthy L, Gaur PM, Kavikishor PB, Shah T, Srinivasan R, Lohse M, Xiao Y, Town CD, Cook DR, May GD, Varshney RK
PMID: 21615673
International journal for parasitology. 2011-10-01; 41.12: 1217-29.
The search for the missing link: a relic plastid in Perkinsus?
Fernández Robledo JA, Caler E, Matsuzaki M, Keeling PJ, Shanmugam D, Roos DS, Vasta GR
PMID: 21889509
Current opinion in virology. 2011-10-01; 1.4: 280-1.
It's a small world after all-viral genomics and the global dominance of viruses
Ghedin E, Upton C
PMID: 22440784
Journal of bacteriology. 2011-10-01; 193.19: 5450-64.
Two new complete genome sequences offer insight into host and tissue specificity of plant pathogenic Xanthomonas spp
Bogdanove AJ, Koebnik R, Lu H, Furutani A, Angiuoli SV, Patil PB, Van Sluys MA, Ryan RP, Meyer DF, Han SW, Aparna G, Rajaram M, Delcher AL, Phillippy AM, Puiu D, Schatz MC, Shumway M, Sommer DD, Trapnell C, Benahmed F, Dimitrov G, Madupu R, Radune D, Sullivan S, Jha G, Ishihara H, Lee SW, Pandey A, Sharma V, Sriariyanun M, Szurek B, Vera-Cruz CM, Dorman KS, Ronald PC, Verdier V, Dow JM, Sonti RV, Tsuge S, Brendel VP, Rabinowicz PD, Leach JE, White FF, Salzberg SL
PMID: 21784931
Journal of visualized experiments : JoVE. 2011-09-29; 55:
Separation of single-stranded DNA, double-stranded DNA and RNA from an environmental viral community using hydroxyapatite chromatography
Fadrosh DW, Andrews-Pfannkoch C, Williamson SJ
PMID: 21989424
BMC genomics. 2011-09-28; 12.470.
A physical map of Brassica oleracea shows complexity of chromosomal changes following recursive paleopolyploidizations
Wang X, Torres MJ, Pierce G, Lemke C, Nelson LK, Yuksel B, Bowers JE, Marler B, Xiao Y, Lin L, Epps E, Sarazen H, Rogers C, Karunakaran S, Ingles J, Giattina E, Mun JH, Seol YJ, Park BS, Amasino RM, Quiros CF, Osborn TC, Pires JC, Town C, Paterson AH
PMID: 21955929
BMC microbiology. 2011-09-26; 11.213.
The protein interaction map of bacteriophage lambda
Rajagopala SV, Casjens S, Uetz P
PMID: 21943085
Nature biotechnology. 2011-09-18; 29.10: 915-21.
Efficient de novo assembly of single-cell bacterial genomes from short-read data sets
Chitsaz H, Yee-Greenbaum JL, Tesler G, Lombardo MJ, Dupont CL, Badger JH, Novotny M, Rusch DB, Fraser LJ, Gormley NA, Schulz-Trieglaff O, Smith GP, Evers DJ, Pevzner PA, Lasken RS
PMID: 21926975
Journal of industrial microbiology & biotechnology. 2011-09-01; 38.9: 1371-7.
Adaptive evolution of nontransgenic Escherichia coli KC01 for improved ethanol tolerance and homoethanol fermentation from xylose
Wang Y, Manow R, Finan C, Wang J, Garza E, Zhou S
PMID: 21188614