Publications

Cancer cell. 2011-07-12; 20.1: 66-78.
MLL-rearranged leukemia is dependent on aberrant H3K79 methylation by DOT1L
Bernt KM, Zhu N, Sinha AU, Vempati S, Faber J, Krivtsov AV, Feng Z, Punt N, Daigle A, Bullinger L, Pollock RM, Richon VM, Kung AL, Armstrong SA
PMID: 21741597
Journal of virology. 2011-07-01; 85.14: 6923-9.
Extensive geographical mixing of 2009 human H1N1 influenza A virus in a single university community
Holmes EC, Ghedin E, Halpin RA, Stockwell TB, Zhang XQ, Fleming R, Davey R, Benson CA, Mehta S, Taplitz R, Liu YT, Brouwer KC, Wentworth DE, Lin X, Schooley RT, INSIGHT FLU002 Study Group
PMID: 21593168
Journal of microbiological methods. 2011-07-01; 86.1: 62-8.
A rapid fingerprinting approach to distinguish between closely related strains of Shewanella
Kan J, Flood B, McCrow JP, Kim JS, Tan L, Nealson KH
PMID: 21477623
Standards in genomic sciences. 2011-07-01; 4.3: 418-29.
TheViral MetaGenome Annotation Pipeline(VMGAP):an automated tool for the functional annotation of viral Metagenomic shotgun sequencing data
Lorenzi HA, Hoover J, Inman J, Safford T, Murphy S, Kagan L, Williamson SJ
PMID: 21886867
Genomics. 2011-07-01; 98.1: 26-39.
Investigating the genome diversity of B. cereus and evolutionary aspects of B. anthracis emergence
Papazisi L, Rasko DA, Ratnayake S, Bock GR, Remortel BG, Appalla L, Liu J, Dracheva T, Braisted JC, Shallom S, Jarrahi B, Snesrud E, Ahn S, Sun Q, Rilstone J, Okstad OA, Kolstø AB, Fleischmann RD, Peterson SN
PMID: 21447378
Evolution; international journal of organic evolution. 2011-07-01; 65.7: 2050-60.
Sex ratio evolution under probabilistic sex determination
Paixão T, Phadke SS, Azevedo RB, Zufall RA
PMID: 21729059
Journal of bacteriology. 2011-07-01; 193.14: 3556-68.
Comparative genomics of 28 Salmonella enterica isolates: evidence for CRISPR-mediated adaptive sublineage evolution
Fricke WF, Mammel MK, McDermott PF, Tartera C, White DG, Leclerc JE, Ravel J, Cebula TA
PMID: 21602358
Applied and environmental microbiology. 2011-07-01; 77.13: 4579-88.
Bacterial subfamily of LuxR regulators that respond to plant compounds
Subramoni S, Gonzalez JF, Johnson A, Péchy-Tarr M, Rochat L, Paulsen I, Loper JE, Keel C, Venturi V
PMID: 21531826
Bioinformatics (Oxford, England). 2011-07-01; 27.13: 1869-70.
Sim4db and Leaff: utilities for fast batch spliced alignment and sequence indexing
Walenz B, Florea L
PMID: 21551146
Journal of computational biology : a journal of computational molecular cell biology. 2011-07-01; 18.7: 895-906.
Big cat phylogenies, consensus trees, and computational thinking
Sul SJ, Williams TL
PMID: 21563975