Publications

Fungal genetics and biology : FG & B. 2010-09-01; 47.9: 736-41.
SMURF: Genomic mapping of fungal secondary metabolite clusters
Khaldi N, Seifuddin FT, Turner G, Haft D, Nierman WC, Wolfe KH, Fedorova ND
PMID: 20554054
Nature biotechnology. 2010-09-01; 28.9: 951-6.
Draft genome sequence of the oilseed species Ricinus communis
Chan AP, Crabtree J, Zhao Q, Lorenzi H, Orvis J, Puiu D, Melake-Berhan A, Jones KM, Redman J, Chen G, Cahoon EB, Gedil M, Stanke M, Haas BJ, Wortman JR, Fraser-Liggett CM, Ravel J, Rabinowicz PD
PMID: 20729833
Journal of bacteriology. 2010-09-01; 192.18: 4541-52.
Identification and characterization of a phosphodiesterase that inversely regulates motility and biofilm formation in Vibrio cholerae
Liu X, Beyhan S, Lim B, Linington RG, Yildiz FH
PMID: 20622061
Nature methods. 2010-09-01; 7.9: 667-8; author reply 668.
Exhaustive benchmarking of the yeast two-hybrid system
Chen YC, Rajagopala SV, Stellberger T, Uetz P
PMID: 20805792
Antimicrobial agents and chemotherapy. 2010-09-01; 54.9: 3569-77.
Genomewide analysis of divergence of antibiotic resistance determinants in closely related isolates of Acinetobacter baumannii
Adams MD, Chan ER, Molyneaux ND, Bonomo RA
PMID: 20530228
PloS one. 2010-08-26; 5.8: e12411.
Comparative genomics of Gardnerella vaginalis strains reveals substantial differences in metabolic and virulence potential
Yeoman CJ, Yildirim S, Thomas SM, Durkin AS, Torralba M, Sutton G, Buhay CJ, Ding Y, Dugan-Rocha SP, Muzny DM, Qin X, Gibbs RA, Leigh SR, Stumpf R, White BA, Highlander SK, Nelson KE, Wilson BA
PMID: 20865041
Genome biology. 2010-08-25; 11.8: R85.
Digital expression profiling of novel diatom transcripts provides insight into their biological functions
Maheswari U, Jabbari K, Petit JL, Porcel BM, Allen AE, Cadoret JP, De Martino A, Heijde M, Kaas R, La Roche J, Lopez PJ, Martin-Jézéquel V, Meichenin A, Mock T, Schnitzler Parker M, Vardi A, Armbrust EV, Weissenbach J, Katinka M, Bowler C
PMID: 20738856
Journal of biomedical semantics. 2010-08-21; 1.1: 8.
The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows. The DBCLS BioHackathon Consortium*
Katayama T, Arakawa K, Nakao M, Ono K, Aoki-Kinoshita KF, Yamamoto Y, Yamaguchi A, Kawashima S, Chun HW, Aerts J, Aranda B, Barboza LH, Bonnal RJ, Bruskiewich R, Bryne JC, Fernández JM, Funahashi A, Gordon PM, Goto N, Groscurth A, Gutteridge A, Holland R, Kano Y, Kawas EA, Kerhornou A, Kibukawa E, Kinjo AR, Kuhn M, Lapp H, Lehvaslaiho H, Nakamura H, Nakamura Y, Nishizawa T, Nobata C, Noguchi T, Oinn TM, Okamoto S, Owen S, Pafilis E, Pocock M, Prins P, Ranzinger R, Reisinger F, Salwinski L, Schreiber M, Senger M, Shigemoto Y, Standley DM, Sugawara H, Tashiro T, Trelles O, Vos RA, Wilkinson MD, York W, Zmasek CM, Asai K, Takagi T
PMID: 20727200
Proceedings of the National Academy of Sciences of the United States of America. 2010-08-17; 107.33: 14679-84.
Targeted metagenomics and ecology of globally important uncultured eukaryotic phytoplankton
Cuvelier ML, Allen AE, Monier A, McCrow JP, Messié M, Tringe SG, Woyke T, Welsh RM, Ishoey T, Lee JH, Binder BJ, Dupont CL, Latasa M, Guigand C, Buck KR, Hilton J, Thiagarajan M, Caler E, Read B, Lasken RS, Chavez FP, Worden AZ
PMID: 20668244
Biotechnology and bioengineering. 2010-08-15; 106.6: 928-37.
In situ effective diffusion coefficient profiles in live biofilms using pulsed-field gradient nuclear magnetic resonance
Renslow RS, Majors PD, McLean JS, Fredrickson JK, Ahmed B, Beyenal H
PMID: 20589671