Publications

BMC genomics. 2010-07-13; 11.430.

A versatile palindromic amphipathic repeat coding sequence horizontally distributed among diverse bacterial and eucaryotic microbes

Röske K, Foecking MF, Yooseph S, Glass JI, Calcutt MJ, Wise KS

PMID: 20626840

BMC research notes. 2010-07-13; 3.191.

VariantClassifier: A hierarchical variant classifier for annotated genomes

Li K, Stockwell TB

PMID: 20626889

Genome biology and evolution. 2010-07-12; 2.212-24.

The sequence of a 1.8-mb bacterial linear plasmid reveals a rich evolutionary reservoir of secondary metabolic pathways

Medema MH, Trefzer A, Kovalchuk A, van den Berg M, Müller U, Heijne W, Wu L, Alam MT, Ronning CM, Nierman WC, Bovenberg RA, Breitling R, Takano E

PMID: 20624727

Proceedings of the National Academy of Sciences of the United States of America. 2010-07-06; 107.27: 12168-73.

Genome sequences of the human body louse and its primary endosymbiont provide insights into the permanent parasitic lifestyle

Kirkness EF, Haas BJ, Sun W, Braig HR, Perotti MA, Clark JM, Lee SH, Robertson HM, Kennedy RC, Elhaik E, Gerlach D, Kriventseva EV, Elsik CG, Graur D, Hill CA, Veenstra JA, Walenz B, Tubío JM, Ribeiro JM, Rozas J, Johnston JS, Reese JT, Popadic A, Tojo M, Raoult D, Reed DL, Tomoyasu Y, Kraus E, Krause E, Mittapalli O, Margam VM, Li HM, Meyer JM, Johnson RM, Romero-Severson J, Vanzee JP, Alvarez-Ponce D, Vieira FG, Aguadé M, Guirao-Rico S, Anzola JM, Yoon KS, Strycharz JP, Unger MF, Christley S, Lobo NF, Seufferheld MJ, Wang N, Dasch GA, Struchiner CJ, Madey G, Hannick LI, Bidwell S, Joardar V, Caler E, Shao R, Barker SC, Cameron S, Bruggner RV, Regier A, Johnson J, Viswanathan L, Utterback TR, Sutton GG, Lawson D, Waterhouse RM, Venter JC, Strausberg RL, Berenbaum MR, Collins FH, Zdobnov EM, Pittendrigh BR

PMID: 20566863

Science (New York, N.Y.). 2010-07-02; 329.5987: 52-6.

Creation of a bacterial cell controlled by a chemically synthesized genome

Gibson DG, Glass JI, Lartigue C, Noskov VN, Chuang RY, Algire MA, Benders GA, Montague MG, Ma L, Moodie MM, Merryman C, Vashee S, Krishnakumar R, Assad-Garcia N, Andrews-Pfannkoch C, Denisova EA, Young L, Qi ZQ, Segall-Shapiro TH, Calvey CH, Parmar PP, Hutchison CA, Smith HO, Venter JC

PMID: 20488990

Journal of bacteriology. 2010-07-01; 192.14: 3838-9.

Genome sequence of the novel marine member of the Gammaproteobacteria strain HTCC5015

Thrash JC, Stingl U, Cho JC, Ferriera S, Johnson J, Vergin KL, Giovannoni SJ

PMID: 20472792

Bioinformatics (Oxford, England). 2010-06-15; 26.12: 1488-92.

Ergatis: a web interface and scalable software system for bioinformatics workflows

Orvis J, Crabtree J, Galens K, Gussman A, Inman JM, Lee E, Nampally S, Riley D, Sundaram JP, Felix V, Whitty B, Mahurkar A, Wortman J, White O, Angiuoli SV

PMID: 20413634

PLoS neglected tropical diseases. 2010-06-15; 4.6: e716.

New assembly, reannotation and analysis of the Entamoeba histolytica genome reveal new genomic features and protein content information

Lorenzi HA, Puiu D, Miller JR, Brinkac LM, Amedeo P, Hall N, Caler EV

PMID: 20559563

BMC genomics. 2010-06-11; 11.374.

Reassociation kinetics-based approach for partial genome sequencing of the cattle tick, Rhipicephalus (Boophilus) microplus

Guerrero FD, Moolhuijzen P, Peterson DG, Bidwell S, Caler E, Bellgard M, Nene VM, Djikeng A

PMID: 20540747

Proceedings of the National Academy of Sciences of the United States of America. 2010-06-08; 107.23: 10567-72.

History of biological metal utilization inferred through phylogenomic analysis of protein structures

Dupont CL, Butcher A, Valas RE, Bourne PE, Caetano-Anollés G

PMID: 20498051