Publications

PloS one. 2010-06-08; 5.6: e10922.
De Novo assembly of the complete genome of an enhanced electricity-producing variant of Geobacter sulfurreducens using only short reads
Nagarajan H, Butler JE, Klimes A, Qiu Y, Zengler K, Ward J, Young ND, Methé BA, Palsson BØ, Lovley DR, Barrett CL
PMID: 20544019
Nature. 2010-06-03; 465.7298: 617-21.
The Ectocarpus genome and the independent evolution of multicellularity in brown algae
Cock JM, Sterck L, Rouzé P, Scornet D, Allen AE, Amoutzias G, Anthouard V, Artiguenave F, Aury JM, Badger JH, Beszteri B, Billiau K, Bonnet E, Bothwell JH, Bowler C, Boyen C, Brownlee C, Carrano CJ, Charrier B, Cho GY, Coelho SM, Collén J, Corre E, Da Silva C, Delage L, Delaroque N, Dittami SM, Doulbeau S, Elias M, Farnham G, Gachon CM, Gschloessl B, Heesch S, Jabbari K, Jubin C, Kawai H, Kimura K, Kloareg B, Küpper FC, Lang D, Le Bail A, Leblanc C, Lerouge P, Lohr M, Lopez PJ, Martens C, Maumus F, Michel G, Miranda-Saavedra D, Morales J, Moreau H, Motomura T, Nagasato C, Napoli CA, Nelson DR, Nyvall-Collén P, Peters AF, Pommier C, Potin P, Poulain J, Quesneville H, Read B, Rensing SA, Ritter A, Rousvoal S, Samanta M, Samson G, Schroeder DC, Ségurens B, Strittmatter M, Tonon T, Tregear JW, Valentin K, von Dassow P, Yamagishi T, Van de Peer Y, Wincker P
PMID: 20520714
Genomics. 2010-06-01; 95.6: 315-27.
Assembly algorithms for next-generation sequencing data
Miller JR, Koren S, Sutton G
PMID: 20211242
Journal of virology. 2010-06-01; 84.11: 5715-8.
Unseasonal transmission of H3N2 influenza A virus during the swine-origin H1N1 pandemic
Ghedin E, Wentworth DE, Halpin RA, Lin X, Bera J, Depasse J, Fitch A, Griesemer S, Hine E, Katzel DA, Overton L, Proudfoot K, Sitz J, Szczypinski B, StGeorge K, Spiro DJ, Holmes EC
PMID: 20237080
Biochimica et biophysica acta. 2010-06-01; 1804.6: 1394-404.
Using chemical derivatization and mass spectrometric analysis to characterize the post-translationally modified Staphylococcus aureus surface protein G
Suh MJ, Clark DJ, Parmer PP, Fleischmann RD, Peterson SN, Pieper R
PMID: 20176147
Applied and environmental microbiology. 2010-06-01; 76.12: 3886-97.
Diversity of 16S rRNA genes within individual prokaryotic genomes
Pei AY, Oberdorf WE, Nossa CW, Agarwal A, Chokshi P, Gerz EA, Jin Z, Lee P, Yang L, Poles M, Brown SM, Sotero S, Desantis T, Brodie E, Nelson K, Pei Z
PMID: 20418441
PLoS pathogens. 2010-05-27; 6.5: e1000922.
The early stage of bacterial genome-reductive evolution in the host
Song H, Hwang J, Yi H, Ulrich RL, Yu Y, Nierman WC, Kim HS
PMID: 20523904
BMC biology. 2010-05-25; 8.70.
Expansion of ribosomally produced natural products: a nitrile hydratase- and Nif11-related precursor family
Haft DH, Basu MK, Mitchell DA
PMID: 20500830
Science (New York, N.Y.). 2010-05-21; 328.5981: 994-9.
A catalog of reference genomes from the human microbiome
Human Microbiome Jumpstart Reference Strains Consortium, Nelson KE, Weinstock GM, Highlander SK, Worley KC, Creasy HH, Wortman JR, Rusch DB, Mitreva M, Sodergren E, Chinwalla AT, Feldgarden M, Gevers D, Haas BJ, Madupu R, Ward DV, Birren BW, Gibbs RA, Methe B, Petrosino JF, Strausberg RL, Sutton GG, White OR, Wilson RK, Durkin S, Giglio MG, Gujja S, Howarth C, Kodira CD, Kyrpides N, Mehta T, Muzny DM, Pearson M, Pepin K, Pati A, Qin X, Yandava C, Zeng Q, Zhang L, Berlin AM, Chen L, Hepburn TA, Johnson J, McCorrison J, Miller J, Minx P, Nusbaum C, Russ C, Sykes SM, Tomlinson CM, Young S, Warren WC, Badger J, Crabtree J, Markowitz VM, Orvis J, Cree A, Ferriera S, Fulton LL, Fulton RS, Gillis M, Hemphill LD, Joshi V, Kovar C, Torralba M, Wetterstrand KA, Abouellleil A, Wollam AM, Buhay CJ, Ding Y, Dugan S, FitzGerald MG, Holder M, Hostetler J, Clifton SW, Allen-Vercoe E, Earl AM, Farmer CN, Liolios K, Surette MG, Xu Q, Pohl C, Wilczek-Boney K, Zhu D
PMID: 20489017
PLoS pathogens. 2010-05-06; 6.5: e1000896.
Infidelity of SARS-CoV Nsp14-exonuclease mutant virus replication is revealed by complete genome sequencing
Eckerle LD, Becker MM, Halpin RA, Li K, Venter E, Lu X, Scherbakova S, Graham RL, Baric RS, Stockwell TB, Spiro DJ, Denison MR
PMID: 20463816