Publications

PLoS currents. 2009-11-03; 1.RRN1126.

The early diversification of influenza A/H1N1pdm

Nelson M, Spiro D, Wentworth D, Beck E, Fan J, Ghedin E, Halpin R, Bera J, Hine E, Proudfoot K, Stockwell T, Lin X, Griesemer S, Kumar S, Bose M, Viboud C, Holmes E, Henrickson K

PMID: 20029664

Journal of computational biology : a journal of computational molecular cell biology. 2009-11-01; 16.11: 1517-28.

Alignment of phylogenetically unambiguous indels in Shewanella

McCrow JP

PMID: 19958081

Nucleic acids research. 2009-11-01; 37.20: 6984-90.

Synthesis of DNA fragments in yeast by one-step assembly of overlapping oligonucleotides

Gibson DG

PMID: 19745056

Journal of bacteriology. 2009-11-01; 191.22: 7144-5.

Complete genome sequence of Robiginitalea biformata HTCC2501

Oh HM, Giovannoni SJ, Lee K, Ferriera S, Johnson J, Cho JC

PMID: 19767438

Proteomics. 2009-11-01; 9.22: 5029-45.

The Shigella dysenteriae serotype 1 proteome, profiled in the host intestinal environment, reveals major metabolic modifications and increased expression of invasive proteins

Pieper R, Zhang Q, Parmar PP, Huang ST, Clark DJ, Alami H, Donohue-Rolfe A, Fleischmann RD, Peterson SN, Tzipori S

PMID: 19813213

Nature biotechnology. 2009-11-01; 27.11: 998-9.

Targeted sequencing with microfluidics

Kirkness EF

PMID: 19898452

BMC bioinformatics. 2009-10-27; 10.356.

phyloXML: XML for evolutionary biology and comparative genomics

Han MV, Zmasek CM

PMID: 19860910

Science (New York, N.Y.). 2009-10-09; 326.5950: 236-7.

Genomics. Genome project standards in a new era of sequencing

Chain PS, Grafham DV, Fulton RS, FitzGerald MG, Hostetler J, Muzny D, Ali J, Birren B, Bruce DC, Buhay C, Cole JR, Ding Y, Dugan S, Field D, Garrity GM, Gibbs R, Graves T, Han CS, Harrison SH, Highlander S, Hugenholtz P, Khouri HM, Kodira CD, Kolker E, Kyrpides NC, Lang D, Lapidus A, Malfatti SA, Markowitz V, Metha T, Nelson KE, Parkhill J, Pitluck S, Qin X, Read TD, Schmutz J, Sozhamannan S, Sterk P, Strausberg RL, Sutton G, Thomson NR, Tiedje JM, Weinstock G, Wollam A, Genomic Standards Consortium Human Microbiome Project Jumpstart Consortium, Detter JC

PMID: 19815760

Nature. 2009-10-08; 461.7265: 724-6.

An agenda for personalized medicine

Ng PC, Murray SS, Levy S, Venter JC

PMID: 19812653

BMC microbiology. 2009-10-07; 9.213.

Whole genome single nucleotide polymorphism based phylogeny of Francisella tularensis and its application to the development of a strain typing assay

Pandya GA, Holmes MH, Petersen JM, Pradhan S, Karamycheva SA, Wolcott MJ, Molins C, Jones M, Schriefer ME, Fleischmann RD, Peterson SN

PMID: 19811647