Publications

Nature. 2009-07-16; 460.7253: 352-8.
The genome of the blood fluke Schistosoma mansoni
Berriman M, Haas BJ, LoVerde PT, Wilson RA, Dillon GP, Cerqueira GC, Mashiyama ST, Al-Lazikani B, Andrade LF, Ashton PD, Aslett MA, Bartholomeu DC, Blandin G, Caffrey CR, Coghlan A, Coulson R, Day TA, Delcher A, DeMarco R, Djikeng A, Eyre T, Gamble JA, Ghedin E, Gu Y, Hertz-Fowler C, Hirai H, Hirai Y, Houston R, Ivens A, Johnston DA, Lacerda D, Macedo CD, McVeigh P, Ning Z, Oliveira G, Overington JP, Parkhill J, Pertea M, Pierce RJ, Protasio AV, Quail MA, Rajandream MA, Rogers J, Sajid M, Salzberg SL, Stanke M, Tivey AR, White O, Williams DL, Wortman J, Wu W, Zamanian M, Zerlotini A, Fraser-Liggett CM, Barrell BG, El-Sayed NM
PMID: 19606141
Extremophiles : life under extreme conditions. 2009-07-01; 13.4: 679-85.
Characterization of the intestinal microbiota of two Antarctic notothenioid fish species
Ward NL, Steven B, Penn K, Methé BA, Detrich WH
PMID: 19472032
Genome research. 2009-07-01; 19.7: 1224-32.
Pervasive, genome-wide positive selection leading to functional divergence in the bacterial genus Campylobacter
Lefébure T, Stanhope MJ
PMID: 19304960
PloS one. 2009-07-01; 4.7: e6085.
The complete genome of Teredinibacter turnerae T7901: an intracellular endosymbiont of marine wood-boring bivalves (shipworms)
Yang JC, Madupu R, Durkin AS, Ekborg NA, Pedamallu CS, Hostetler JB, Radune D, Toms BS, Henrissat B, Coutinho PM, Schwarz S, Field L, Trindade-Silva AE, Soares CA, Elshahawi S, Hanora A, Schmidt EW, Haygood MG, Posfai J, Benner J, Madinger C, Nove J, Anton B, Chaudhary K, Foster J, Holman A, Kumar S, Lessard PA, Luyten YA, Slatko B, Wood N, Wu B, Teplitski M, Mougous JD, Ward N, Eisen JA, Badger JH, Distel DL
PMID: 19568419
Proteome science. 2009-06-29; 7.22.
Comparison of two label-free global quantitation methods, APEX and 2D gel electrophoresis, applied to the Shigella dysenteriae proteome
Kuntumalla S, Braisted JC, Huang ST, Parmar PP, Clark DJ, Alami H, Zhang Q, Donohue-Rolfe A, Tzipori S, Fleischmann RD, Peterson SN, Pieper R
PMID: 19563668
BMC bioinformatics. 2009-06-16; 10.184.
FuGEFlow: data model and markup language for flow cytometry
Qian Y, Tchuvatkina O, Spidlen J, Wilkinson P, Gasparetto M, Jones AR, Manion FJ, Scheuermann RH, Sekaly RP, Brinkman RR
PMID: 19531228
BMC genomics. 2009-06-15; 10.267.
Transcriptomes and pathways associated with infectivity, survival and immunogenicity in Brugia malayi L3
Li BW, Rush AC, Mitreva M, Yin Y, Spiro D, Ghedin E, Weil GJ
PMID: 19527522
Virology. 2009-06-05; 388.2: 270-8.
The origin and global emergence of adamantane resistant A/H3N2 influenza viruses
Nelson MI, Simonsen L, Viboud C, Miller MA, Holmes EC
PMID: 19394063
Journal of bacteriology. 2009-06-01; 191.12: 3504-16.
Indole acts as an extracellular cue regulating gene expression in Vibrio cholerae
Mueller RS, Beyhan S, Saini SG, Yildiz FH, Bartlett DH
PMID: 19329638
Environmental microbiology. 2009-06-01; 11.6: 1358-75.
Comparative day/night metatranscriptomic analysis of microbial communities in the North Pacific subtropical gyre
Poretsky RS, Hewson I, Sun S, Allen AE, Zehr JP, Moran MA
PMID: 19207571