Publications

Genome. 2005-08-01; 48.4: 598-605.
Analyzing the potato abiotic stress transcriptome using expressed sequence tags
Rensink W, Hart A, Liu J, Ouyang S, Zismann V, Buell CR
PMID: 16094426
Bioinformatics (Oxford, England). 2005-08-01; 21.15: 3308-11.
CGHAnalyzer: a stand-alone software package for cancer genome analysis using array-based DNA copy number data
Margolin AA, Greshock J, Naylor TL, Mosse Y, Maris JM, Bignell G, Saeed AI, Quackenbush J, Weber BL
PMID: 15905276
Bioinformatics (Oxford, England). 2005-08-01; 21.15: 3324-6.
MeSHer: identifying biological concepts in microarray assays based on PubMed references and MeSH terms
Djebbari A, Karamycheva S, Howe E, Quackenbush J
PMID: 15919728
Molecular biology and evolution. 2005-08-01; 22.8: 1686-93.
Host switch leads to emergence of Plasmodium vivax malaria in humans
Mu J, Joy DA, Duan J, Huang Y, Carlton J, Walker J, Barnwell J, Beerli P, Charleston MA, Pybus OG, Su XZ
PMID: 15858201
Protist. 2005-08-01; 156.2: 203-14.
Gene discovery in the Acanthamoeba castellanii genome
Anderson IJ, Watkins RF, Samuelson J, Spencer DF, Majoros WH, Gray MW, Loftus BJ
PMID: 16171187
BioEssays : news and reviews in molecular, cellular and developmental biology. 2005-08-01; 27.8: 839-48.
Reduced representation sequencing: a success in maize and a promise for other plant genomes
Barbazuk WB, Bedell JA, Rabinowicz PD
PMID: 16015589
Genomics. 2005-08-01; 86.2: 142-58.
Synchronous global assessment of gene and protein expression in colorectal cancer progression
Kwong KY, Bloom GC, Yang I, Boulware D, Coppola D, Haseman J, Chen E, McGrath A, Makusky AJ, Taylor J, Steiner S, Zhou J, Yeatman TJ, Quackenbush J
PMID: 15951154
Science (New York, N.Y.). 2005-07-15; 309.5733: 416-22.
The genome of the African trypanosome Trypanosoma brucei
Berriman M, Ghedin E, Hertz-Fowler C, Blandin G, Renauld H, Bartholomeu DC, Lennard NJ, Caler E, Hamlin NE, Haas B, Böhme U, Hannick L, Aslett MA, Shallom J, Marcello L, Hou L, Wickstead B, Alsmark UC, Arrowsmith C, Atkin RJ, Barron AJ, Bringaud F, Brooks K, Carrington M, Cherevach I, Chillingworth TJ, Churcher C, Clark LN, Corton CH, Cronin A, Davies RM, Doggett J, Djikeng A, Feldblyum T, Field MC, Fraser A, Goodhead I, Hance Z, Harper D, Harris BR, Hauser H, Hostetler J, Ivens A, Jagels K, Johnson D, Johnson J, Jones K, Kerhornou AX, Koo H, Larke N, Landfear S, Larkin C, Leech V, Line A, Lord A, Macleod A, Mooney PJ, Moule S, Martin DM, Morgan GW, Mungall K, Norbertczak H, Ormond D, Pai G, Peacock CS, Peterson J, Quail MA, Rabbinowitsch E, Rajandream MA, Reitter C, Salzberg SL, Sanders M, Schobel S, Sharp S, Simmonds M, Simpson AJ, Tallon L, Turner CM, Tait A, Tivey AR, Van Aken S, Walker D, Wanless D, Wang S, White B, White O, Whitehead S, Woodward J, Wortman J, Adams MD, Embley TM, Gull K, Ullu E, Barry JD, Fairlamb AH, Opperdoes F, Barrell BG, Donelson JE, Hall N, Fraser CM, Melville SE, El-Sayed NM
PMID: 16020726
Science (New York, N.Y.). 2005-07-15; 309.5733: 409-15.
The genome sequence of Trypanosoma cruzi, etiologic agent of Chagas disease
El-Sayed NM, Myler PJ, Bartholomeu DC, Nilsson D, Aggarwal G, Tran AN, Ghedin E, Worthey EA, Delcher AL, Blandin G, Westenberger SJ, Caler E, Cerqueira GC, Branche C, Haas B, Anupama A, Arner E, Aslund L, Attipoe P, Bontempi E, Bringaud F, Burton P, Cadag E, Campbell DA, Carrington M, Crabtree J, Darban H, da Silveira JF, de Jong P, Edwards K, Englund PT, Fazelina G, Feldblyum T, Ferella M, Frasch AC, Gull K, Horn D, Hou L, Huang Y, Kindlund E, Klingbeil M, Kluge S, Koo H, Lacerda D, Levin MJ, Lorenzi H, Louie T, Machado CR, McCulloch R, McKenna A, Mizuno Y, Mottram JC, Nelson S, Ochaya S, Osoegawa K, Pai G, Parsons M, Pentony M, Pettersson U, Pop M, Ramirez JL, Rinta J, Robertson L, Salzberg SL, Sanchez DO, Seyler A, Sharma R, Shetty J, Simpson AJ, Sisk E, Tammi MT, Tarleton R, Teixeira S, Van Aken S, Vogt C, Ward PN, Wickstead B, Wortman J, White O, Fraser CM, Stuart KD, Andersson B
PMID: 16020725
Science (New York, N.Y.). 2005-07-15; 309.5733: 404-9.
Comparative genomics of trypanosomatid parasitic protozoa
El-Sayed NM, Myler PJ, Blandin G, Berriman M, Crabtree J, Aggarwal G, Caler E, Renauld H, Worthey EA, Hertz-Fowler C, Ghedin E, Peacock C, Bartholomeu DC, Haas BJ, Tran AN, Wortman JR, Alsmark UC, Angiuoli S, Anupama A, Badger J, Bringaud F, Cadag E, Carlton JM, Cerqueira GC, Creasy T, Delcher AL, Djikeng A, Embley TM, Hauser C, Ivens AC, Kummerfeld SK, Pereira-Leal JB, Nilsson D, Peterson J, Salzberg SL, Shallom J, Silva JC, Sundaram J, Westenberger S, White O, Melville SE, Donelson JE, Andersson B, Stuart KD, Hall N
PMID: 16020724

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