Publications

PLoS genetics. 2008-08-15; 4.8: e1000160.
Genetic variation in an individual human exome
Ng PC, Levy S, Huang J, Stockwell TB, Walenz BP, Li K, Axelrod N, Busam DA, Strausberg RL, Venter JC
PMID: 18704161
PloS one. 2008-08-13; 3.8: e2945.
Comparative metagenomics reveals host specific metavirulomes and horizontal gene transfer elements in the chicken cecum microbiome
Qu A, Brulc JM, Wilson MK, Law BF, Theoret JR, Joens LA, Konkel ME, Angly F, Dinsdale EA, Edwards RA, Nelson KE, White BA
PMID: 18698407
Bioinformatics (Oxford, England). 2008-08-01; 24.15: 1743-4.
MPIDB: the microbial protein interaction database
Goll J, Rajagopala SV, Shiau SC, Wu H, Lamb BT, Uetz P
PMID: 18556668
Journal of bacteriology. 2008-08-01; 190.15: 5455-63.
Insights into plant cell wall degradation from the genome sequence of the soil bacterium Cellvibrio japonicus
Deboy RT, Mongodin EF, Fouts DE, Tailford LE, Khouri H, Emerson JB, Mohamoud Y, Watkins K, Henrissat B, Gilbert HJ, Nelson KE
PMID: 18556790
Genome research. 2008-08-01; 18.8: 1336-46.
An MCMC algorithm for haplotype assembly from whole-genome sequence data
Bansal V, Halpern AL, Axelrod N, Bafna V
PMID: 18676820
Journal of bacteriology. 2008-08-01; 190.15: 5512-6.
Direct involvement of type II secretion system in extracellular translocation of Shewanella oneidensis outer membrane cytochromes MtrC and OmcA
Shi L, Deng S, Marshall MJ, Wang Z, Kennedy DW, Dohnalkova AC, Mottaz HM, Hill EA, Gorby YA, Beliaev AS, Richardson DJ, Zachara JM, Fredrickson JK
PMID: 18502849
Plant molecular biology. 2008-08-01; 67.6: 567-80.
Gene expression profiling of M. truncatula transcription factors identifies putative regulators of grain legume seed filling
Verdier J, Kakar K, Gallardo K, Le Signor C, Aubert G, Schlereth A, Town CD, Udvardi MK, Thompson RD
PMID: 18528765
PLoS genetics. 2008-07-25; 4.7: e1000141.
Complete genome sequence of the N2-fixing broad host range endophyte Klebsiella pneumoniae 342 and virulence predictions verified in mice
Fouts DE, Tyler HL, Deboy RT, Daugherty S, Ren Q, Badger JH, Durkin AS, Huot H, Shrivastava S, Kothari S, Dodson RJ, Mohamoud Y, Khouri H, Roesch LF, Krogfelt KA, Struve C, Triplett EW, Methé BA
PMID: 18654632
PloS one. 2008-07-09; 3.7: e2655.
Genes differentially expressed in conidia and hyphae of Aspergillus fumigatus upon exposure to human neutrophils
Sugui JA, Kim HS, Zarember KA, Chang YC, Gallin JI, Nierman WC, Kwon-Chung KJ
PMID: 18648542
Plant methods. 2008-07-08; 4.18.
A community resource for high-throughput quantitative RT-PCR analysis of transcription factor gene expression in Medicago truncatula
Kakar K, Wandrey M, Czechowski T, Gaertner T, Scheible WR, Stitt M, Torres-Jerez I, Xiao Y, Redman JC, Wu HC, Cheung F, Town CD, Udvardi MK
PMID: 18611268