Publications

mBio. 2019-03-26; 10.2:
Rapid Replacement of Acinetobacter baumannii Strains Accompanied by Changes in Lipooligosaccharide Loci and Resistance Gene Repertoire
Adams MD, Wright MS, Karichu JK, Venepally P, Fouts DE, Chan AP, Richter SS, Jacobs MR, Bonomo RA
PMID: 30914511
Frontiers in microbiology. 2019-03-26; 10.559.
Phenotypic and Genotypic Characterization of <i>Acinetobacter</i> spp. Panel Strains: A Cornerstone to Facilitate Antimicrobial Development
D'Souza R, Pinto NA, Phuong NL, Higgins PG, Vu TN, Byun JH, Cho YL, Choi JR, Yong D
PMID: 30972044
Bioinformatics (Oxford, England). 2019-03-15; 35.6: 1049-1050.
Large-scale comparative analysis of microbial pan-genomes using PanOCT
Inman JM, Sutton GG, Beck E, Brinkac LM, Clarke TH, Fouts DE
PMID: 30165579
mSphere. 2019-03-13; 4.2:
Emergence of New Delhi Metallo-β-Lactamase (NDM-5) in <i>Klebsiella quasipneumoniae</i> from Neonates in a Nigerian Hospital
Brinkac LM, White R, D'Souza R, Nguyen K, Obaro SK, Fouts DE
PMID: 30867330
Virology. 2019-03-01; 529.29-42.
Classification of human Herpesviridae proteins using Domain-architecture Aware Inference of Orthologs (DAIO)
Zmasek CM, Knipe DM, Pellett PE, Scheuermann RH
PMID: 30660046
Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases. 2019-03-01; 68.68-76.
A novel approach for the identification and phylogenetic delineation of human Mycoplasma species and strains using genomic segment sequence analysis
Roachford OSE, Nelson KE, Mohapatra BR
PMID: 30529087
Molecular biology and evolution. 2019-03-01; 36.3: 435-446.
Lateral Gene Transfer Shapes the Distribution of RuBisCO among Candidate Phyla Radiation Bacteria and DPANN Archaea
Jaffe AL, Castelle CJ, Dupont CL, Banfield JF
PMID: 30544151
Genome biology and evolution. 2019-03-01; 11.3: 688-705.
Genetic Diversity and Gene Family Expansions in Members of the Genus Entamoeba
Wilson IW, Weedall GD, Lorenzi H, Howcroft T, Hon CC, Deloger M, Guillén N, Paterson S, Clark CG, Hall N
PMID: 30668670
The ISME journal. 2019-03-01; 13.3: 576-587.
Evolutionary trends in host physiology outweigh dietary niche in structuring primate gut microbiomes
Amato KR, G Sanders J, Song SJ, Nute M, Metcalf JL, Thompson LR, Morton JT, Amir A, J McKenzie V, Humphrey G, Gogul G, Gaffney J, L Baden A, A O Britton G, P Cuozzo F, Di Fiore A, J Dominy N, L Goldberg T, Gomez A, Kowalewski MM, J Lewis R, Link A, L Sauther M, Tecot S, A White B, E Nelson K, M Stumpf R, Knight R, R Leigh S
PMID: 29995839
Microbiology resource announcements. 2019-02-28; 8.9:
Closed Genome Sequences of Clinical Neisseria gonorrhoeae Strains Obtained from Combined Oxford Nanopore and Illumina Sequencing
White RC, Torralba M, Colt K, Harrison F, Goglin K, Nguyen K, D'Souza R, Bristow CC, Ellis O, Soge OO, Klausner JD, Fouts DE
PMID: 30834380