Publications

Viruses. 2018-05-14; 10.5:
Bioinformatics Meets Virology: The European Virus Bioinformatics Center's Second Annual Meeting
Ibrahim B, Arkhipova K, Andeweg AC, Posada-Céspedes S, Enault F, Gruber A, Koonin EV, Kupczok A, Lemey P, McHardy AC, McMahon DP, Pickett BE, Robertson DL, Scheuermann RH, Zhernakova A, Zwart MP, Schönhuth A, Dutilh BE, Marz M
PMID: 29757994
Frontiers in immunology. 2018-05-08; 9.976.
VDJServer: A Cloud-Based Analysis Portal and Data Commons for Immune Repertoire Sequences and Rearrangements
Christley S, Scarborough W, Salinas E, Rounds WH, Toby IT, Fonner JM, Levin MK, Kim M, Mock SA, Jordan C, Ostmeyer J, Buntzman A, Rubelt F, Davila ML, Monson NL, Scheuermann RH, Cowell LG
PMID: 29867956
Human molecular genetics. 2018-05-01; 27.R1: R40-R47.
Cell type discovery using single-cell transcriptomics: implications for ontological representation
Aevermann BD, Novotny M, Bakken T, Miller JA, Diehl AD, Osumi-Sutherland D, Lasken RS, Lein ES, Scheuermann RH
PMID: 29590361
Briefings in bioinformatics. 2018-05-01; 19.3: 374-386.
Statistical method evaluation for differentially methylated CpGs in base resolution next-generation DNA sequencing data
Zhang Y, Baheti S, Sun Z
PMID: 28040747
The journal of allergy and clinical immunology. In practice. 2018-05-01; 6.3: 719-725.
Childhood Asthma: Is It All About Bacteria and Not About Viruses? A Pro/Con Debate
Beigelman A, Rosas-Salazar C, Hartert TV
PMID: 29339131
Molecular biology and evolution. 2018-05-01; 35.5: 1160-1175.
Genomic Changes Associated with the Evolutionary Transitions of Nostoc to a Plant Symbiont
Warshan D, Liaimer A, Pederson E, Kim SY, Shapiro N, Woyke T, Altermark B, Pawlowski K, Weyman PD, Dupont CL, Rasmussen U
PMID: 29554291
mSphere. 2018-04-25; 3.2:
Iron Acquisition and Siderophore Release by Carbapenem-Resistant Sequence Type 258
Holden VI, Wright MS, Houle S, Collingwood A, Dozois CM, Adams MD, Bachman MA
PMID: 29669884
Science (New York, N.Y.). 2018-04-20; 360.6386: 327-331.
Paternally inherited cis-regulatory structural variants are associated with autism
Brandler WM, Antaki D, Gujral M, Kleiber ML, Whitney J, Maile MS, Hong O, Chapman TR, Tan S, Tandon P, Pang T, Tang SC, Vaux KK, Yang Y, Harrington E, Juul S, Turner DJ, Thiruvahindrapuram B, Kaur G, Wang Z, Kingsmore SF, Gleeson JG, Bisson D, Kakaradov B, Telenti A, Venter JC, Corominas R, Toma C, Cormand B, Rueda I, Guijarro S, Messer KS, Nievergelt CM, Arranz MJ, Courchesne E, Pierce K, Muotri AR, Iakoucheva LM, Hervas A, Scherer SW, Corsello C, Sebat J
PMID: 29674594
Frontiers in immunology. 2018-04-16; 9.747.
Antibodies Reactive to Commensal <i>Streptococcus mitis</i> Show Cross-Reactivity With Virulent <i>Streptococcus pneumoniae</i> Serotypes
Shekhar S, Khan R, Ferreira DM, Mitsi E, German E, Rørvik GH, Berild D, Schenck K, Kwon K, Petersen F
PMID: 29713324