Publications

Theranostics. 2017-01-01; 7.2: 238-252.

Comprehensive Metaproteomic Analyses of Urine in the Presence and Absence of Neutrophil-Associated Inflammation in the Urinary Tract

Yu Y, Sikorski P, Smith M, Bowman-Gholston C, Cacciabeve N, Nelson KE, Pieper R

PMID: 28042331

Microbial ecology. 2017-01-01; 73.1: 91-100.

Effect of Macondo Prospect 252 Oil on Microbiota Associated with Pelagic Sargassum in the Northern Gulf of Mexico

Torralba MG, Franks JS, Gomez A, Yooseph S, Nelson KE, Grimes DJ

PMID: 27815589

PloS one. 2017-01-01; 12.12: e0187973.

Profiling analysis of circulating microRNA in peripheral blood of patients with class IV lupus nephritis

Navarro-Quiroz E, Pacheco-Lugo L, Navarro-Quiroz R, Lorenzi H, España-Puccini P, Díaz-Olmos Y, Almendrales L, Olave V, Gonzalez-Torres H, Diaz-Perez A, Dominguez A, Iglesias A, García R, Aroca-Martinez G

PMID: 29136041

mSphere. 2016-12-28; 1.6:

The Denture-Associated Oral Microbiome in Health and Stomatitis

Shi B, Wu T, McLean J, Edlund A, Young Y, He X, Lv H, Zhou X, Shi W, Li H, Lux R

PMID: 28066812

Proceedings of the National Academy of Sciences of the United States of America. 2016-12-20; 113.51: E8344-E8353.

Unique attributes of cyanobacterial metabolism revealed by improved genome-scale metabolic modeling and essential gene analysis

Broddrick JT, Rubin BE, Welkie DG, Du N, Mih N, Diamond S, Lee JJ, Golden SS, Palsson BO

PMID: 27911809

The Journal of infectious diseases. 2016-12-15; 214.12: 1924-1928.

Differences in the Nasopharyngeal Microbiome During Acute Respiratory Tract Infection With Human Rhinovirus and Respiratory Syncytial Virus in Infancy

Rosas-Salazar C, Shilts MH, Tovchigrechko A, Schobel S, Chappell JD, Larkin EK, Shankar J, Yooseph S, Nelson KE, Halpin RA, Moore ML, Anderson LJ, Peebles RS, Das SR, Hartert TV

PMID: 27923952

Journal of virology. 2016-12-15; 90.24: 11247-11258.

Deep Sequencing of Influenza A Virus from a Human Challenge Study Reveals a Selective Bottleneck and Only Limited Intrahost Genetic Diversification

Sobel Leonard A, McClain MT, Smith GJ, Wentworth DE, Halpin RA, Lin X, Ransier A, Stockwell TB, Das SR, Gilbert AS, Lambkin-Williams R, Ginsburg GS, Woods CW, Koelle K

PMID: 27707932

mSphere. 2016-12-14; 1.6:

A Phylogeny-Based Global Nomenclature System and Automated Annotation Tool for H1 Hemagglutinin Genes from Swine Influenza A Viruses

Anderson TK, Macken CA, Lewis NS, Scheuermann RH, Van Reeth K, Brown IH, Swenson SL, Simon G, Saito T, Berhane Y, Ciacci-Zanella J, Pereda A, Davis CT, Donis RO, Webby RJ, Vincent AL

PMID: 27981236

mBio. 2016-12-13; 7.6:

Comprehensive Genome Analysis of Carbapenemase-Producing Enterobacter spp.: New Insights into Phylogeny, Population Structure, and Resistance Mechanisms

Chavda KD, Chen L, Fouts DE, Sutton G, Brinkac L, Jenkins SG, Bonomo RA, Adams MD, Kreiswirth BN

PMID: 27965456

Philosophical transactions of the Royal Society of London. Series B, Biological sciences. 2016-12-05; 371.1709:

Secondary metabolite arsenal of an opportunistic pathogenic fungus

Bignell E, Cairns TC, Throckmorton K, Nierman WC, Keller NP

PMID: 28080993