Publications

Methods in molecular biology (Clifton, N.J.). 2017-01-01; 1620.225-248.

Harnessing the Power of PCR Molecular Fingerprinting Methods and Next Generation Sequencing for Understanding Structure and Function in Microbial Communities

Phadke S, Salvador AF, Alves JI, Bretschger O, Alves MM, Pereira MA

PMID: 28540712

Plant & cell physiology. 2017-01-01; 58.1: e4.

ThaleMine: A Warehouse for Arabidopsis Data Integration and Discovery

Krishnakumar V, Contrino S, Cheng CY, Belyaeva I, Ferlanti ES, Miller JR, Vaughn MW, Micklem G, Town CD, Chan AP

PMID: 28013278

Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing. 2017-01-01; 22.564-575.

PRODUCTION OF A PRELIMINARY QUALITY CONTROL PIPELINE FOR SINGLE NUCLEI RNA-SEQ AND ITS APPLICATION IN THE ANALYSIS OF CELL TYPE DIVERSITY OF POST-MORTEM HUMAN BRAIN NEOCORTEX

Aevermann B, McCorrison J, Venepally P, Hodge R, Bakken T, Miller J, Novotny M, Tran DN, Diezfuertes F, Christiansen L, Zhang F, Steemers F, Lasken RS, Lein ED, Schork N, Scheuermann RH

PMID: 27897007

Theranostics. 2017-01-01; 7.2: 238-252.

Comprehensive Metaproteomic Analyses of Urine in the Presence and Absence of Neutrophil-Associated Inflammation in the Urinary Tract

Yu Y, Sikorski P, Smith M, Bowman-Gholston C, Cacciabeve N, Nelson KE, Pieper R

PMID: 28042331

mSystems. 2017-01-01; 2.1:

Integrated Regulatory and Metabolic Networks of the Marine Diatom Phaeodactylum tricornutum Predict the Response to Rising CO2 Levels

Levering J, Dupont CL, Allen AE, Palsson BO, Zengler K

PMID: 28217746

PloS one. 2017-01-01; 12.6: e0171758.

A comprehensive software suite for protein family construction and functional site prediction

Haft DR, Haft DH

PMID: 28182651

The ISME journal. 2017-01-01; 11.1: 201-211.

Speciation and ecological success in dimly lit waters: horizontal gene transfer in a green sulfur bacteria bloom unveiled by metagenomic assembly

Llorens-Marès T, Liu Z, Allen LZ, Rusch DB, Craig MT, Dupont CL, Bryant DA, Casamayor EO

PMID: 27392085

Nature reviews. Microbiology. 2017-01-01; 15.1: 6-20.

Probing the evolution, ecology and physiology of marine protists using transcriptomics

Caron DA, Alexander H, Allen AE, Archibald JM, Armbrust EV, Bachy C, Bell CJ, Bharti A, Dyhrman ST, Guida SM, Heidelberg KB, Kaye JZ, Metzner J, Smith SR, Worden AZ

PMID: 27867198

Pharmacogenetics and genomics. 2017-01-01; 27.1: 7-18.

Genome-wide association study of paliperidone efficacy

Li Q, Wineinger NE, Fu DJ, Libiger O, Alphs L, Savitz A, Gopal S, Cohen N, Schork NJ

PMID: 27846195

PloS one. 2017-01-01; 12.12: e0187973.

Profiling analysis of circulating microRNA in peripheral blood of patients with class IV lupus nephritis

Navarro-Quiroz E, Pacheco-Lugo L, Navarro-Quiroz R, Lorenzi H, España-Puccini P, Díaz-Olmos Y, Almendrales L, Olave V, Gonzalez-Torres H, Diaz-Perez A, Dominguez A, Iglesias A, García R, Aroca-Martinez G

PMID: 29136041