Publications

BMC bioinformatics. 2016-10-06; 17.Suppl 13: 333.

VDJML: a file format with tools for capturing the results of inferring immune receptor rearrangements

Toby IT, Levin MK, Salinas EA, Christley S, Bhattacharya S, Breden F, Buntzman A, Corrie B, Fonner J, Gupta NT, Hershberg U, Marthandan N, Rosenfeld A, Rounds W, Rubelt F, Scarborough W, Scott JK, Uduman M, Vander Heiden JA, Scheuermann RH, Monson N, Kleinstein SH, Cowell LG

PMID: 27766961

Proceedings of the National Academy of Sciences of the United States of America. 2016-10-04; 113.40: E5944-E5951.

Optimal activation of Fc-mediated effector functions by influenza virus hemagglutinin antibodies requires two points of contact

Leon PE, He W, Mullarkey CE, Bailey MJ, Miller MS, Krammer F, Palese P, Tan GS

PMID: 27647907

Journal of virology. 2016-10-01; 90.19: 8454-63.

Reversion of Cold-Adapted Live Attenuated Influenza Vaccine into a Pathogenic Virus

Zhou B, Meliopoulos VA, Wang W, Lin X, Stucker KM, Halpin RA, Stockwell TB, Schultz-Cherry S, Wentworth DE

PMID: 27440882

Human molecular genetics. 2016-10-01; 25.19: R182-R189.

Mission critical: the need for proteomics in the era of next-generation sequencing and precision medicine

Cayer DM, Nazor KL, Schork NJ

PMID: 27439388

Human molecular genetics. 2016-10-01; 25.19: 4350-4368.

Fine-mapping, novel loci identification, and SNP association transferability in a genome-wide association study of QRS duration in African Americans

Evans DS, Avery CL, Nalls MA, Li G, Barnard J, Smith EN, Tanaka T, Butler AM, Buxbaum SG, Alonso A, Arking DE, Berenson GS, Bis JC, Buyske S, Carty CL, Chen W, Chung MK, Cummings SR, Deo R, Eaton CB, Fox ER, Heckbert SR, Heiss G, Hindorff LA, Hsueh WC, Isaacs A, Jamshidi Y, Kerr KF, Liu F, Liu Y, Lohman KK, Magnani JW, Maher JF, Mehra R, Meng YA, Musani SK, Newton-Cheh C, North KE, Psaty BM, Redline S, Rotter JI, Schnabel RB, Schork NJ, Shohet RV, Singleton AB, Smith JD, Soliman EZ, Srinivasan SR, Taylor HA, Van Wagoner DR, Wilson JG, Young T, Zhang ZM, Zonderman AB, Evans MK, Ferrucci L, Murray SS, Tranah GJ, Whitsel EA, Reiner AP, CHARGE QRS Consortium, Sotoodehnia N

PMID: 27577874

Virology. 2016-10-01; 497.305-313.

Parainfluenza virus 5 upregulates CD55 expression to produce virions with enhanced resistance to complement-mediated neutralization

Li Y, Johnson JB, Parks GD

PMID: 27505156

Nucleic acids research. 2016-09-30; 44.17: 8501-11.

Impact of donor-recipient phylogenetic distance on bacterial genome transplantation

Labroussaa F, Lebaudy A, Baby V, Gourgues G, Matteau D, Vashee S, Sirand-Pugnet P, Rodrigue S, Lartigue C

PMID: 27488189

BMC genomics. 2016-09-30; 17.1: 767.

Acquisition and loss of virulence-associated factors during genome evolution and speciation in three clades of Bordetella species

Linz B, Ivanov YV, Preston A, Brinkac L, Parkhill J, Kim M, Harris SR, Goodfield LL, Fry NK, Gorringe AR, Nicholson TL, Register KB, Losada L, Harvill ET

PMID: 27716057

BMC genomics. 2016-09-27; 17.1: 761.

Web-based bioinformatics workflows for end-to-end RNA-seq data computation and analysis in agricultural animal species

Li W, Richter RA, Jung Y, Zhu Q, Li RW

PMID: 27678198

Emerging microbes & infections. 2016-09-21; 5.9: e104.

Molecular epidemiology of human enterovirus 71 at the origin of an epidemic of fatal hand, foot and mouth disease cases in Cambodia

Duong V, Mey C, Eloit M, Zhu H, Danet L, Huang Z, Zou G, Tarantola A, Cheval J, Perot P, Laurent D, Richner B, Ky S, Heng S, Touch S, Sovann L, van Doorn R, Tan Tran T, Farrar JJ, Wentworth DE, Das SR, Stockwell TB, Manuguerra JC, Delpeyroux F, Guan Y, Altmeyer R, Buchy P

PMID: 27651091