GCID Publications

Genome biology. 2013-07-26; 14.7: R77.
The genome and transcriptome of the enteric parasite Entamoeba invadens, a model for encystation
Ehrenkaufer GM, Weedall GD, Williams D, Lorenzi HA, Caler E, Hall N, Singh U
PMID: 23889909
Journal of virology. 2013-07-01; 87.14: 8064-74.
Sequence analysis of in vivo defective interfering-like RNA of influenza A H1N1 pandemic virus
Munroe D, Saira K, Rappoport C, Lin X, Schwarze S, DePasse JV, Aagaard B, Halpin R, Adzic D, Twaddle A, Grarup J, Stockwell T, Herrero P, Angus B, Jansson P, Cozzi-Lepri A, Kjær J, Delfino M, Jakobsen M, Dugan V, Jensen B, Dwyer DE, Jensen K, Freiberg M, Juncher H, Horban A, Lopez P, Losso M, Mocroft A, Lynfield R, Pearson M, Wentworth DN, Portas B, Holmes EC, Sabin C, Davey R, Tillmann K, Wentworth DE, Babiker A, Ghedin E, Braimah N, INSIGHT FLU002 Study Group, Collaco-Moraes Y, INSIGHT FLU003 Study Group, Hudson F, Kummeling I, Pacciarini F, Paton N, DuChene A, George M, Harrison M, Krum E, Larson G, Nelson R, Quan K, Quan S, Reilly C, Schultz T, Thompson G, Wyman N, Avihingsanon A, Cassar L, Charoentonpuban K, Emery S, Laohajinda K, Jupimai T, Lanusse I, Moricz A, Otegui I, Ruxrungtham K, Robson R, Finley E, Gordin F, Sanchez A, Vjecha M, Baxter J, Brown S, Hoover M, Baseler B, Metcalf J, Cox N, Gubareva L, Hancock K, Katz J, Klimov A, Shaw M, Rubinson L, Barcan L, Corral J, David D, Laplume H, Lasala M, Lopardo G, Losso M, Lupo S, Warley E, Bloch M, Dwyer D, Moore R, Pett S, Roth N, Soo T, Vlahakis E, Burgmann H, Clumeck N, De Wit S, Florence E, Kabeya K, Weckx J, Perez C, Wolff M, Gerstoft J, Lundgren J, Ostergaard L, Zilmer K, Bogner J, Brockmeyer N, Faetkenheuer G, Klinker H, Plettenberg A, Rockstroh J, Stephan C, Antoniadou A, Koratzanis G, Koulouris N, Polixronopoulos V, Sambatakou H, Vasilopoulos N, Caplinskas S, La Rosa A, Mendo F, Salazar R, Valencia J, Bakowska E, Horban A, Knysz B, Antunes F, Doroana M, Padayatchi N, Dalmau D, Fernandez-Cruz E, Gatell J, Sanz J, Soriano V, Chetchotisakd P, Suwanpimolkul G, Leen C, Cohen C, Cohn D, DeHovitz J, El-Sadr W, Glesby M, Gordin F, Hodder S, Markowitz N, Novak R, Schooley R, Simon G, Tedaldi E, Temesgen Z, Timpone J, Uslan D, Wade B, Elliott J, Konecny P, McBride J, Jorens P, Wu T, Mathiesen L, Nielsen H, Pedersen S, Bergmann F, Maagaard A, Estrada V, Freud H, Garrido R, Moreno J, Pano-Pardo J, Angus B, Chadwick D, Dockrell D, Newport M, Wilkins E, Anderson H, Baker J, El-Sadr WA, Freiberg M, Gulick R, Gurka D, Paez A, Patil N, Reboli A, Sands M
PMID: 23678180
Virology journal. 2013-06-06; 10.181.
Sequencing viral genomes from a single isolated plaque
Depew J, Zhou B, McCorrison JM, Wentworth DE, Purushe J, Koroleva G, Fouts DE
PMID: 23742765
Virology journal. 2013-06-06; 10.179.
Evolution of a reassortant North American gull influenza virus lineage: drift, shift and stability
Hall JS, Teslaa JL, Nashold SW, Halpin RA, Stockwell T, Wentworth DE, Dugan V, Ip HS
PMID: 23742717
Science translational medicine. 2013-05-15; 5.185: 185ra68.
Synthetic generation of influenza vaccine viruses for rapid response to pandemics
Dormitzer PR, Suphaphiphat P, Gibson DG, Wentworth DE, Stockwell TB, Algire MA, Alperovich N, Barro M, Brown DM, Craig S, Dattilo BM, Denisova EA, De Souza I, Eickmann M, Dugan VG, Ferrari A, Gomila RC, Han L, Judge C, Mane S, Matrosovich M, Merryman C, Palladino G, Palmer GA, Spencer T, Strecker T, Trusheim H, Uhlendorff J, Wen Y, Yee AC, Zaveri J, Zhou B, Becker S, Donabedian A, Mason PW, Glass JI, Rappuoli R, Venter JC
PMID: 23677594
BMC research notes. 2013-05-03; 6.177.
Rapid research response to the 2009 A(H1N1)pdm09 influenza pandemic (Revised)
Keitel WA, Piedra PA, Atmar RL, Demmler G, El Sahly HM, Barrett J, Halpin RA, Lagos R, Fisher-Hoch S, Munoz F
PMID: 23641940
Genome research. 2013-05-01; 23.5: 878-88.
Nearly finished genomes produced using gel microdroplet culturing reveal substantial intraspecies genomic diversity within the human microbiome
Fitzsimons MS, Novotny M, Lo CC, Dichosa AE, Yee-Greenbaum JL, Snook JP, Gu W, Chertkov O, Davenport KW, McMurry K, Reitenga KG, Daughton AR, He J, Johnson SL, Gleasner CD, Wills PL, Parson-Quintana B, Chain PS, Detter JC, Lasken RS, Han CS
PMID: 23493677
Genome announcements. 2013-03-14; 1.2: e0004413.
Genome Sequence of the Group III Clostridium botulinum Strain Eklund-C
Hassan KA, Tetu SG, Elbourne LD, Johnson EA, Paulsen IT
PMID: 23516187
Cell host & microbe. 2013-03-13; 13.3: 314-23.
Defining influenza A virus hemagglutinin antigenic drift by sequential monoclonal antibody selection
Das SR, Hensley SE, Ince WL, Brooke CB, Subba A, Delboy MG, Russ G, Gibbs JS, Bennink JR, Yewdell JW
PMID: 23498956
Genome announcements. 2013-02-28; 1.2: e0013412.
Whole-Genome Draft Sequences of 26 Enterohemorrhagic Escherichia coli O157:H7 Strains
Eppinger M, Daugherty S, Agrawal S, Galens K, Sengamalay N, Sadzewicz L, Tallon L, Cebula TA, Mammel MK, Feng P, Soderlund R, Tarr PI, DebRoy C, Dudley EG, Fraser CM, Ravel J
PMID: 23516226

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