Publications

BMC bioinformatics. 2015-09-22; 16.304.
Group-based variant calling leveraging next-generation supercomputing for large-scale whole-genome sequencing studies
Standish KA, Carland TM, Lockwood GK, Pfeiffer W, Tatineni M, Huang CC, Lamberth S, Cherkas Y, Brodmerkel C, Jaeger E, Smith L, Rajagopal G, Curran ME, Schork NJ
PMID: 26395405
Journal of virology. 2015-09-01; 89.18: 9689-92.
Evolution of Influenza B Virus in Kuala Lumpur, Malaysia, between 1995 and 2008
Sam IC, Su YC, Chan YF, Nor'E SS, Hassan A, Jafar FL, Joseph U, Halpin RA, Ghedin E, Hooi PS, Fourment M, Hassan H, AbuBakar S, Wentworth DE, Smith GJ
PMID: 26136576
Open forum infectious diseases. 2015-09-01; 2.3: ofv093.
Potential Influence of Staphylococcus aureus Clonal Complex 30 Genotype and Transcriptome on Hematogenous Infections
Sharma-Kuinkel BK, Mongodin EF, Myers JR, Vore KL, Canfield GS, Fraser CM, Rude TH, Fowler VG, Gill SR
PMID: 26213692
Journal of virology. 2015-09-01; 89.17: 8871-9.
Phylodynamics of Enterovirus A71-Associated Hand, Foot, and Mouth Disease in Viet Nam
Geoghegan JL, Tan le V, Kühnert D, Halpin RA, Lin X, Simenauer A, Akopov A, Das SR, Stockwell TB, Shrivastava S, Ngoc NM, Uyen le TT, Tuyen NT, Thanh TT, Hang VT, Qui PT, Hung NT, Khanh TH, Thinh le Q, Nhan le NT, Van HM, Viet do C, Tuan HM, Viet HL, Hien TT, Chau NV, Thwaites G, Grenfell BT, Stadler T, Wentworth DE, Holmes EC, Van Doorn HR
PMID: 26085170
Clinical chemistry. 2015-09-01; 61.9: 1207-8.
The Sequence of the Human Genome
Venter JC, Smith HO, Adams MD
PMID: 26185218
Vaccine. 2015-08-26; 33.36: 4368-82.
Strengthening the influenza vaccine virus selection and development process: Report of the 3rd WHO Informal Consultation for Improving Influenza Vaccine Virus Selection held at WHO headquarters, Geneva, Switzerland, 1-3 April 2014
Sanouri TA, Alexander B, Alhammad BA, Alonso W, Ampofo WK, Azziz-Baumgartner E, Barakat A, Baric R, Barnes JR, Bashir U, Baumeister E, Hutchinson F, Belmont JW, Bogner P, Bruno A, Bucher D, Daniels P, Oliviera Rd, Donis R, Santos GD, Engelhardt OG, Garten R, Giovanni M, Guriev V, Gysin R, Huang S, Hungnes O, Jackson S, Kang C, Khramstov N, Lal R, Lassig M, Le QM, Le VP, Li Y, Liu MT, Martinez IL, McCauley J, Miyaki C, Paget J, Precioso A, Rydland KM, Sasono PM, Schweiger B, Shinde V, Siqueira M, Stevens J, Su IJ, Swayne DE, Thompson C, Waddell AL, Wang D, Wentworth D, Wildner O, Xiyan X, Xuemei Z, Ziegler T, Barr I, Bedford T, Blum M, Boschetti N, Bright H, Chadha M, Chen Y, Chen Z, Cox N, Di Francesco V, Dinarvand R, Donabedian A, Eichelberger M, Enouf V, Evseenko V, Fasce R, Fries LF, Gerentes L, Guan Y, Guillebaud J, Hay A, Hirve S, Hongje Y, Jernigan D, Katz J, Waiboci L, Wairagkar N, Walaza S, Wan XF, Webby R, Weir J, Wood J, Yamashita M, Yingyong T, Zambon M, Zhiping Y, Kazanji M, Laurie K, Luksza M, Mbayame N, Mironenko A, Mokhtari-Azad T, Mol E, Neumeier E, Njoum R, Penttinen P, Prosenc K, Rahman M, Rambaut A, Raw I, Sawanpanyalert P, Scheuermann R, Setiawaty V, Shu Y, Smith D, Spinu I, Spiro D, Tashiro M, Taylor B, Treurnicht F, Villanueva J
PMID: 26148877
BMC genomics. 2015-08-22; 16.1: 631.
Stool microbiota composition is associated with the prospective risk of Plasmodium falciparum infection
Yooseph S, Kirkness EF, Tran TM, Harkins DM, Jones MB, Torralba MG, O'Connell E, Nutman TB, Doumbo S, Doumbo OK, Traore B, Crompton PD, Nelson KE
PMID: 26296559
The Journal of infectious diseases. 2015-08-15; 212.4: 578-84.
The Interplay Between Host Genetic Variation, Viral Replication, and Microbial Translocation in Untreated HIV-Infected Individuals
Aubert V, Battegay M, Bernasconi E, Böni J, Bucher HC, Burton-Jeangros C, Calmy A, Cavassini M, Dollenmaier G, Egger M, Elzi L, Fehr J, Fellay J, Furrer H, Fux CA, Gorgievski M, Günthard H, Haerry D, Hasse B, Hirsch HH, Hoffmann M, Hösli I, Kahlert C, Kaiser L, Keiser O, Klimkait T, Kouyos R, Kovari H, Ledergerber B, Martinetti G, Martinez de Tejada B, Metzner K, Müller N, Nadal D, Nicca D, Pantaleo G, Rauch A, Regenass S, Rickenbach M, Rudin C, Schöni-Affolter F, Schmid P, Schüpbach J, Speck R, Tarr P, Telenti A, Trkola A, Vernazza P, Weber R, Yerly S
PMID: 25701868
Bioinformatics (Oxford, England). 2015-08-15; 31.16: 2745-7.
PROVEAN web server: a tool to predict the functional effect of amino acid substitutions and indels
Choi Y, Chan AP
PMID: 25851949
Proceedings of the National Academy of Sciences of the United States of America. 2015-08-11; 112.32: 9938-43.
Phytoplankton-bacterial interactions mediate micronutrient colimitation at the coastal Antarctic sea ice edge
Bertrand EM, McCrow JP, Moustafa A, Zheng H, McQuaid JB, Delmont TO, Post AF, Sipler RE, Spackeen JL, Xu K, Bronk DA, Hutchins DA, Allen AE
PMID: 26221022