Publications

Proceedings of the National Academy of Sciences of the United States of America. 2015-11-24; 112.47: 14658-63.

Polymorphisms of large effect explain the majority of the host genetic contribution to variation of HIV-1 virus load

McLaren PJ, Coulonges C, Bartha I, Lenz TL, Deutsch AJ, Bashirova A, Buchbinder S, Carrington MN, Cossarizza A, Dalmau J, De Luca A, Goedert JJ, Gurdasani D, Haas DW, Herbeck JT, Johnson EO, Kirk GD, Lambotte O, Luo M, Mallal S, van Manen D, Martinez-Picado J, Meyer L, Miro JM, Mullins JI, Obel N, Poli G, Sandhu MS, Schuitemaker H, Shea PR, Theodorou I, Walker BD, Weintrob AC, Winkler CA, Wolinsky SM, Raychaudhuri S, Goldstein DB, Telenti A, de Bakker PI, Zagury JF, Fellay J

PMID: 26553974

Microbiome. 2015-11-16; 3.53.

Variable responses of human and non-human primate gut microbiomes to a Western diet

Amato KR, Yeoman CJ, Cerda G, Schmitt CA, Cramer JD, Miller ME, Gomez A, Turner TR, Wilson BA, Stumpf RM, Nelson KE, White BA, Knight R, Leigh SR

PMID: 26568112

Proceedings of the National Academy of Sciences of the United States of America. 2015-11-10; 112.45: 14024-9.

Library preparation methodology can influence genomic and functional predictions in human microbiome research

Jones MB, Highlander SK, Anderson EL, Li W, Dayrit M, Klitgord N, Fabani MM, Seguritan V, Green J, Pride DT, Yooseph S, Biggs W, Nelson KE, Venter JC

PMID: 26512100

G3 (Bethesda, Md.). 2015-11-06; 6.1: 107-20.

The Genomic Signature of Population Reconnection Following Isolation: From Theory to HIV

Alcala N, Jensen JD, Telenti A, Vuilleumier S

PMID: 26546308

Bioresource technology. 2015-11-01; 195.254-64.

Functional and taxonomic dynamics of an electricity-consuming methane-producing microbial community

Bretschger O, Carpenter K, Phan T, Suzuki S, Ishii S, Grossi-Soyster E, Flynn M, Hogan J

PMID: 26178785

The journals of gerontology. Series A, Biological sciences and medical sciences. 2015-11-01; 70.11: 1418-24.

Mitochondrial DNA Heteroplasmy Associations With Neurosensory and Mobility Function in Elderly Adults

Tranah GJ, Yaffe K, Katzman SM, Lam ET, Pawlikowska L, Kwok PY, Schork NJ, Manini TM, Kritchevsky S, Thomas F, Newman AB, Harris TB, Coleman AL, Gorin MB, Helzner EP, Rowbotham MC, Browner WS, Cummings SR, Health, Aging and Body Composition Study

PMID: 26328603

Science (New York, N.Y.). 2015-10-30; 350.6260: 507-8.

MICROBIOME. A unified initiative to harness Earth's microbiomes

Alivisatos AP, Alivisatos AP, Blaser MJ, Balskus EP, Biteen JS, Brodie EL, Chun M, Blaser MJ, Dangl JL, Brodie EL, Donohue TJ, Browning ND, Dorrestein PC, Cardon ZG, Cavanaugh CM, Gilbert JA, Green JL, Chun M, Jansson JK, Cliffel DE, Colwell RR, Knight R, Dangl JL, Maxon ME, McFall-Ngai MJ, Donohue TJ, Miller JF, Dorrestein PC, Pollard KS, Fraser SE, Ruby EG, Friesen ML, Gilbert JA, Taha SA, Gilbert SF, Unified Microbiome Initiative Consortium, Green JL, Harwood CS, Henriksen JR, Highlander SK, Huang Y, Jansson JK, Johnson AT, Kasper DL, Knight R, Kujawinski EB, Martin CL, Maxon ME, McFall-Ngai MJ, Miller JF, Moran MA, Nelson KE, Orphan VJ, Ozcan A, Paša-Tolić L, Pollard KS, Regev A, Rubin EM, Ruby EG, Segre JA, Silver PA, Taha SA, Vivanco JM, Weinstock GM, Weiss PS, Yang P

PMID: 26511287

Genome announcements. 2015-10-29; 3.5:

First Complete Genome Sequences of Two Keystone Viruses from Florida

Stockwell TB, Heberlein-Larson LA, Tan Y, Halpin RA, Fedorova N, Katzel DA, Smole S, Unnasch TR, Kramer LD, Das SR

PMID: 26514762

Standards in genomic sciences. 2015-10-29; 10.89.

High quality draft genomes of the Mycoplasma mycoides subsp. mycoides challenge strains Afadé and B237

Fischer A, Santana-Cruz I, Hegerman J, Gourlé H, Schieck E, Lambert M, Nadendla S, Wesonga H, Miller RA, Vashee S, Weber J, Meens J, Frey J, Jores J

PMID: 26516405

Bioinformatics (Oxford, England). 2015-10-15; 31.20: 3380-2.

Sincell: an R/Bioconductor package for statistical assessment of cell-state hierarchies from single-cell RNA-seq

Juliá M, Telenti A, Rausell A

PMID: 26099264