Publications

Cytometry. Part A : the journal of the International Society for Analytical Cytology. 2015-07-01; 87.7: 591-3.

State-of-the-Art in the Computational Analysis of Cytometry Data

Brinkman RR, Aghaeepour N, Finak G, Gottardo R, Mosmann T, Scheuermann RH

PMID: 26111230

Antimicrobial agents and chemotherapy. 2015-07-01; 59.7: 4162-72.

Direct administration in the respiratory tract improves efficacy of broadly neutralizing anti-influenza virus monoclonal antibodies

Leyva-Grado VH, Tan GS, Leon PE, Yondola M, Palese P

PMID: 25941218

PLoS pathogens. 2015-06-18; 11.6: e1004943.

Correction: The pH-Responsive PacC Transcription Factor of Aspergillus fumigatus Governs Epithelial Entry and Tissue Invasion during Pulmonary Aspergillosis

Bertuzzi M, Schrettl M, Alcazar-Fuoli L, Cairns TC, Muñoz A, Walker LA, Herbst S, Safari M, Cheverton AM, Chen D, Liu H, Saijo S, Fedorova ND, Armstrong-James D, Munro CA, Read ND, Filler SG, Espeso EA, Nierman WC, Haas H, Bignell EM

PMID: 26086393

Emerging microbes & infections. 2015-06-17; 4.e35.

Long-term surveillance of H7 influenza viruses in American wild aquatic birds: are the H7N3 influenza viruses in wild birds the precursors of highly pathogenic strains in domestic poultry?

Krauss S, Stucker KM, Schobel SA, Danner A, Friedman K, Knowles JP, Kayali G, Niles LJ, Dey AD, Raven G, Pryor P, Lin X, Das SR, Stockwell TB, Wentworth DE, Webster RG

PMID: 26954883

Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases. 2015-06-01; 32.191-8.

SISPA-Seq for rapid whole genome surveys of bacterial isolates

Wright MS, Stockwell TB, Beck E, Busam DA, Bajaksouzian S, Jacobs MR, Bonomo RA, Adams MD

PMID: 25796360

Bioinformatics (Oxford, England). 2015-06-01; 31.11: 1833-5.

SFA-SPA: a suffix array based short peptide assembler for metagenomic data

Yang Y, Zhong C, Yooseph S

PMID: 25637561

Bioinformatics (Oxford, England). 2015-06-01; 31.11: 1724-8.

Omics Pipe: a community-based framework for reproducible multi-omics data analysis

Fisch KM, Meißner T, Gioia L, Ducom JC, Carland TM, Loguercio S, Su AI

PMID: 25637560

Genome biology. 2015-05-20; 16.102.

An integrative analysis of post-translational histone modifications in the marine diatom Phaeodactylum tricornutum

Veluchamy A, Rastogi A, Lin X, Lombard B, Murik O, Thomas Y, Dingli F, Rivarola M, Ott S, Liu X, Sun Y, Rabinowicz PD, McCarthy J, Allen AE, Loew D, Bowler C, Tirichine L

PMID: 25990474

Retrovirology. 2015-05-16; 12.41.

Identification of potential HIV restriction factors by combining evolutionary genomic signatures with functional analyses

McLaren PJ, Gawanbacht A, Pyndiah N, Krapp C, Hotter D, Kluge SF, Götz N, Heilmann J, Mack K, Sauter D, Thompson D, Perreaud J, Rausell A, Munoz M, Ciuffi A, Kirchhoff F, Telenti A

PMID: 25980612

Retrovirology. 2015-05-07; 12.37.

HIV-1 immune activation induces Siglec-1 expression and enhances viral trans-infection in blood and tissue myeloid cells

Pino M, Erkizia I, Benet S, Erikson E, Fernández-Figueras MT, Guerrero D, Dalmau J, Ouchi D, Rausell A, Ciuffi A, Keppler OT, Telenti A, Kräusslich HG, Martinez-Picado J, Izquierdo-Useros N

PMID: 25947229