Publications

JMIR public health and surveillance. 2015-07-01; 1.2: e7.
Identifying Adverse Effects of HIV Drug Treatment and Associated Sentiments Using Twitter
Adrover C, Bodnar T, Huang Z, Telenti A, Salathé M
PMID: 27227141
Cytometry. Part A : the journal of the International Society for Analytical Cytology. 2015-07-01; 87.7: 591-3.
State-of-the-Art in the Computational Analysis of Cytometry Data
Brinkman RR, Aghaeepour N, Finak G, Gottardo R, Mosmann T, Scheuermann RH
PMID: 26111230
Journal of virology. 2015-07-01; 89.13: 6860-73.
Equine and Canine Influenza H3N8 Viruses Show Minimal Biological Differences Despite Phylogenetic Divergence
Feng KH, Gonzalez G, Deng L, Yu H, Tse VL, Huang L, Huang K, Wasik BR, Zhou B, Wentworth DE, Holmes EC, Chen X, Varki A, Murcia PR, Parrish CR
PMID: 25903329
PLoS pathogens. 2015-06-18; 11.6: e1004943.
Correction: The pH-Responsive PacC Transcription Factor of Aspergillus fumigatus Governs Epithelial Entry and Tissue Invasion during Pulmonary Aspergillosis
Bertuzzi M, Schrettl M, Alcazar-Fuoli L, Cairns TC, Muñoz A, Walker LA, Herbst S, Safari M, Cheverton AM, Chen D, Liu H, Saijo S, Fedorova ND, Armstrong-James D, Munro CA, Read ND, Filler SG, Espeso EA, Nierman WC, Haas H, Bignell EM
PMID: 26086393
Emerging microbes & infections. 2015-06-17; 4.e35.
Long-term surveillance of H7 influenza viruses in American wild aquatic birds: are the H7N3 influenza viruses in wild birds the precursors of highly pathogenic strains in domestic poultry?
Krauss S, Stucker KM, Schobel SA, Danner A, Friedman K, Knowles JP, Kayali G, Niles LJ, Dey AD, Raven G, Pryor P, Lin X, Das SR, Stockwell TB, Wentworth DE, Webster RG
PMID: 26954883
Bioinformatics (Oxford, England). 2015-06-01; 31.11: 1724-8.
Omics Pipe: a community-based framework for reproducible multi-omics data analysis
Fisch KM, Meißner T, Gioia L, Ducom JC, Carland TM, Loguercio S, Su AI
PMID: 25637560
Bioinformatics (Oxford, England). 2015-06-01; 31.11: 1833-5.
SFA-SPA: a suffix array based short peptide assembler for metagenomic data
Yang Y, Zhong C, Yooseph S
PMID: 25637561
Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases. 2015-06-01; 32.191-8.
SISPA-Seq for rapid whole genome surveys of bacterial isolates
Wright MS, Stockwell TB, Beck E, Busam DA, Bajaksouzian S, Jacobs MR, Bonomo RA, Adams MD
PMID: 25796360
Genome biology. 2015-05-20; 16.102.
An integrative analysis of post-translational histone modifications in the marine diatom Phaeodactylum tricornutum
Veluchamy A, Rastogi A, Lin X, Lombard B, Murik O, Thomas Y, Dingli F, Rivarola M, Ott S, Liu X, Sun Y, Rabinowicz PD, McCarthy J, Allen AE, Loew D, Bowler C, Tirichine L
PMID: 25990474
Retrovirology. 2015-05-16; 12.41.
Identification of potential HIV restriction factors by combining evolutionary genomic signatures with functional analyses
McLaren PJ, Gawanbacht A, Pyndiah N, Krapp C, Hotter D, Kluge SF, Götz N, Heilmann J, Mack K, Sauter D, Thompson D, Perreaud J, Rausell A, Munoz M, Ciuffi A, Kirchhoff F, Telenti A
PMID: 25980612