Publications

Scientific data. 2014-10-14; 1.140033.
A comprehensive collection of systems biology data characterizing the host response to viral infection
Aevermann BD, Pickett BE, Kumar S, Klem EB, Agnihothram S, Askovich PS, Bankhead A, Bolles M, Carter V, Chang J, Clauss TR, Dash P, Diercks AH, Eisfeld AJ, Ellis A, Fan S, Ferris MT, Gralinski LE, Green RR, Gritsenko MA, Hatta M, Heegel RA, Jacobs JM, Jeng S, Josset L, Kaiser SM, Kelly S, Law GL, Li C, Li J, Long C, Luna ML, Matzke M, McDermott J, Menachery V, Metz TO, Mitchell H, Monroe ME, Navarro G, Neumann G, Podyminogin RL, Purvine SO, Rosenberger CM, Sanders CJ, Schepmoes AA, Shukla AK, Sims A, Sova P, Tam VC, Tchitchek N, Thomas PG, Tilton SC, Totura A, Wang J, Webb-Robertson BJ, Wen J, Weiss JM, Yang F, Yount B, Zhang Q, McWeeney S, Smith RD, Waters KM, Kawaoka Y, Baric R, Aderem A, Katze MG, Scheuermann RH
PMID: 25977790
PLoS pathogens. 2014-10-01; 10.10: e1004420.
Characterization of uncultivable bat influenza virus using a replicative synthetic virus
Zhou B, Ma J, Liu Q, Bawa B, Wang W, Shabman RS, Duff M, Lee J, Lang Y, Cao N, Nagy A, Lin X, Stockwell TB, Richt JA, Wentworth DE, Ma W
PMID: 25275541
Virus genes. 2014-10-01; 49.2: 196-207.
Whole-genome analyses of DS-1-like human G2P[4] and G8P[4] rotavirus strains from Eastern, Western and Southern Africa
Nyaga MM, Stucker KM, Esona MD, Jere KC, Mwinyi B, Shonhai A, Tsolenyanu E, Mulindwa A, Chibumbya JN, Adolfine H, Halpin RA, Roy S, Stockwell TB, Berejena C, Seheri ML, Mwenda JM, Steele AD, Wentworth DE, Mphahlele MJ
PMID: 24952422
Expert review of proteomics. 2014-10-01; 11.5: 593-609.
Proteomes of pathogenic Escherichia coli/Shigella group surveyed in their host environments
Suh MJ, Kuntumalla S, Yu Y, Pieper R
PMID: 25163594
Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases. 2014-10-01; 27.156-62.
Whole-genome analyses reveals the animal origin of a rotavirus G4P[6] detected in a child with severe diarrhea
Martinez M, Galeano ME, Akopov A, Palacios R, Russomando G, Kirkness EF, Parra GI
PMID: 25075468
Metabolomics : Official journal of the Metabolomic Society. 2014-10-01; 10.5: 897-908.
A Statistical Analysis of the Effects of Urease Pre-treatment on the Measurement of the Urinary Metabolome by Gas Chromatography-Mass Spectrometry
Webb-Robertson BJ, Kim YM, Zink EM, Hallaian KA, Zhang Q, Madupu R, Waters KM, Metz TO
PMID: 25254001
The American journal of geriatric psychiatry : official journal of the American Association for Geriatric Psychiatry. 2014-10-01; 22.10: 997-1006.e5.
Candidate SNP associations of optimism and resilience in older adults: exploratory study of 935 community-dwelling adults
Rana BK, Darst BF, Bloss C, Shih PA, Depp C, Nievergelt CM, Allison M, Parsons JK, Schork N, Jeste DV
PMID: 24791650
PLoS pathogens. 2014-10-01; 10.10: e1004413.
The pH-responsive PacC transcription factor of Aspergillus fumigatus governs epithelial entry and tissue invasion during pulmonary aspergillosis
Bertuzzi M, Schrettl M, Alcazar-Fuoli L, Cairns TC, Muñoz A, Walker LA, Herbst S, Safari M, Cheverton AM, Chen D, Liu H, Saijo S, Fedorova ND, Armstrong-James D, Munro CA, Read ND, Filler SG, Espeso EA, Nierman WC, Haas H, Bignell EM
PMID: 25329394
Journal of virology. 2014-09-01; 88.17: 10110-9.
Introductions and evolution of human-origin seasonal influenza a viruses in multinational swine populations
Nelson MI, Wentworth DE, Culhane MR, Vincent AL, Viboud C, LaPointe MP, Lin X, Holmes EC, Detmer SE
PMID: 24965467
The ISME journal. 2014-09-01; 8.9: 1892-903.
Picocyanobacteria containing a novel pigment gene cluster dominate the brackish water Baltic Sea
Larsson J, Celepli N, Ininbergs K, Dupont CL, Yooseph S, Bergman B, Ekman M
PMID: 24621524