Publications

PloS one. 2013-12-20; 8.12: e81352.
Microbiome analysis of stool samples from African Americans with colon polyps
Brim H, Yooseph S, Zoetendal EG, Lee E, Torralbo M, Laiyemo AO, Shokrani B, Nelson K, Ashktorab H
PMID: 24376500
Genome announcements. 2013-12-19; 1.6:
Genome Sequences of 28 Bordetella pertussis U.S. Outbreak Strains Dating from 2010 to 2012
Harvill ET, Goodfield LL, Ivanov Y, Meyer JA, Newth C, Cassiday P, Tondella ML, Liao P, Zimmerman J, Meert K, Wessel D, Berger J, Dean JM, Holubkov R, Burr J, Liu T, Brinkac L, Kim M, Losada L
PMID: 24356839
PloS one. 2013-12-11; 8.12: e81862.
A metagenomic framework for the study of airborne microbial communities
Yooseph S, Andrews-Pfannkoch C, Tenney A, McQuaid J, Williamson S, Thiagarajan M, Brami D, Zeigler-Allen L, Hoffman J, Goll JB, Fadrosh D, Glass J, Adams MD, Friedman R, Venter JC
PMID: 24349140
Journal of biological engineering. 2013-12-10; 7.1: 30.
Assembly of eukaryotic algal chromosomes in yeast
Karas BJ, Molparia B, Jablanovic J, Hermann WJ, Lin YC, Dupont CL, Tagwerker C, Yonemoto IT, Noskov VN, Chuang RY, Allen AE, Glass JI, Hutchison CA, Smith HO, Venter JC, Weyman PD
PMID: 24325901
Proceedings of the National Academy of Sciences of the United States of America. 2013-12-03; 110.49: 19802-7.
RNA-sequencing from single nuclei
Grindberg RV, Yee-Greenbaum JL, McConnell MJ, Novotny M, O'Shaughnessy AL, Lambert GM, Araúzo-Bravo MJ, Lee J, Fishman M, Robbins GE, Lin X, Venepally P, Badger JH, Galbraith DW, Gage FH, Lasken RS
PMID: 24248345
Current biology : CB. 2013-12-02; 23.23: 2365-74.
Circadian yin-yang regulation and its manipulation to globally reprogram gene expression
Xu Y, Weyman PD, Umetani M, Xiong J, Qin X, Xu Q, Iwasaki H, Johnson CH
PMID: 24210617
Virology. 2013-12-01; 447.1-2: 45-51.
Metadata-driven comparative analysis tool for sequences (meta-CATS): an automated process for identifying significant sequence variations that correlate with virus attributes
Pickett BE, Liu M, Sadat EL, Squires RB, Noronha JM, He S, Jen W, Zaremba S, Gu Z, Zhou L, Larsen CN, Bosch I, Gehrke L, McGee M, Klem EB, Scheuermann RH
PMID: 24210098
Water research. 2013-12-01; 47.19: 7120-30.
Identifying the microbial communities and operational conditions for optimized wastewater treatment in microbial fuel cells
Ishii S, Suzuki S, Norden-Krichmar TM, Wu A, Yamanaka Y, Nealson KH, Bretschger O
PMID: 24183402
Infection and immunity. 2013-12-01; 81.12: 4635-48.
Analysis of the proteome of intracellular Shigella flexneri reveals pathways important for intracellular growth
Pieper R, Fisher CR, Suh MJ, Huang ST, Parmar P, Payne SM
PMID: 24101689
Genome announcements. 2013-11-07; 1.6:
Sequence Determination of Burkholderia pseudomallei Strain NCTC 13392 Colony Morphology Variants
Vipond J, Kane J, Hatch G, McCorrison J, Nierman WC, Losada L
PMID: 24201202