Publications

Current opinion in microbiology. 2013-10-01; 16.5: 605-17.
Lineage specific gene family enrichment at the microscale in marine systems
Allen AE, Allen LZ, McCrow JP
PMID: 24377115
The New phytologist. 2013-10-01; 200.1: 74-85.
The trade-off between the light-harvesting and photoprotective functions of fucoxanthin-chlorophyll proteins dominates light acclimation in Emiliania huxleyi (clone CCMP 1516)
McKew BA, Davey P, Finch SJ, Hopkins J, Lefebvre SC, Metodiev MV, Oxborough K, Raines CA, Lawson T, Geider RJ
PMID: 23790241
The New phytologist. 2013-10-01; 200.1: 61-73.
Plasticity in the proteome of Emiliania huxleyi CCMP 1516 to extremes of light is highly targeted
McKew BA, Lefebvre SC, Achterberg EP, Metodieva G, Raines CA, Metodiev MV, Geider RJ
PMID: 23750769
Nature genetics. 2013-10-01; 45.10: 1190-7.
Evolution of high-level ethambutol-resistant tuberculosis through interacting mutations in decaprenylphosphoryl-β-D-arabinose biosynthetic and utilization pathway genes
Safi H, Lingaraju S, Amin A, Kim S, Jones M, Holmes M, McNeil M, Peterson SN, Chatterjee D, Fleischmann R, Alland D
PMID: 23995136
BMC bioinformatics. 2013-09-08; 14.269.
Efficient alignment of RNA secondary structures using sparse dynamic programming
Zhong C, Zhang S
PMID: 24011432
Science translational medicine. 2013-09-04; 5.201: 201ra120.
Hedgehog agonist therapy corrects structural and cognitive deficits in a Down syndrome mouse model
Das I, Park JM, Shin JH, Jeon SK, Lorenzi H, Linden DJ, Worley PF, Reeves RH
PMID: 24005160
Journal of clinical microbiology. 2013-09-01; 51.9: 2943-9.
New rapid scheme for distinguishing the subspecies of the Mycobacterium abscessus group and identifying Mycobacterium massiliense isolates with inducible clarithromycin resistance
Shallom SJ, Gardina PJ, Myers TG, Sebastian Y, Conville P, Calhoun LB, Tettelin H, Olivier KN, Uzel G, Sampaio EP, Holland SM, Zelazny AM
PMID: 23804391
Journal of virology. 2013-09-01; 87.17: 9742-53.
Influenza A virus hemagglutinin trimerization completes monomer folding and antigenicity
Magadán JG, Khurana S, Das SR, Frank GM, Stevens J, Golding H, Bennink JR, Yewdell JW
PMID: 23824811
PLoS biology. 2013-08-27; 11.8: e1001638.
The COMBREX project: design, methodology, and initial results
Anton BP, Chang YC, Brown P, Choi HP, Faller LL, Guleria J, Hu Z, Klitgord N, Levy-Moonshine A, Maksad A, Mazumdar V, McGettrick M, Osmani L, Pokrzywa R, Rachlin J, Swaminathan R, Allen B, Housman G, Monahan C, Rochussen K, Tao K, Bhagwat AS, Brenner SE, Columbus L, de Crécy-Lagard V, Ferguson D, Fomenkov A, Gadda G, Morgan RD, Osterman AL, Rodionov DA, Rodionova IA, Rudd KE, Söll D, Spain J, Xu SY, Bateman A, Blumenthal RM, Bollinger JM, Chang WS, Ferrer M, Friedberg I, Galperin MY, Gobeill J, Haft D, Hunt J, Karp P, Klimke W, Krebs C, Macelis D, Madupu R, Martin MJ, Miller JH, O'Donovan C, Palsson B, Ruch P, Setterdahl A, Sutton G, Tate J, Yakunin A, Tchigvintsev D, Plata G, Hu J, Greiner R, Horn D, Sjölander K, Salzberg SL, Vitkup D, Letovsky S, Segrè D, DeLisi C, Roberts RJ, Steffen M, Kasif S
PMID: 24013487
PLoS pathogens. 2013-08-22; 9.8: e1003575.
Aspergillus galactosaminogalactan mediates adherence to host constituents and conceals hyphal β-glucan from the immune system
Gravelat FN, Beauvais A, Liu H, Lee MJ, Snarr BD, Chen D, Xu W, Kravtsov I, Hoareau CM, Vanier G, Urb M, Campoli P, Al Abdallah Q, Lehoux M, Chabot JC, Ouimet MC, Baptista SD, Fritz JH, Nierman WC, Latgé JP, Mitchell AP, Filler SG, Fontaine T, Sheppard DC
PMID: 23990787