Publications

PLoS computational biology. 2012-01-01; 8.6: e1002358.
Metabolic reconstruction for metagenomic data and its application to the human microbiome
Abubucker S, Segata N, Goll J, Schubert AM, Izard J, Cantarel BL, Rodriguez-Mueller B, Zucker J, Thiagarajan M, Henrissat B, White O, Kelley ST, Methé B, Schloss PD, Gevers D, Mitreva M, Huttenhower C
PMID: 22719234
PloS one. 2012-01-01; 7.5: e32118.
Analyses of the microbial diversity across the human microbiome
Li K, Bihan M, Yooseph S, Methé BA
PMID: 22719823
PLoS genetics. 2012-01-01; 8.7: e1002626.
Cell contact-dependent outer membrane exchange in myxobacteria: genetic determinants and mechanism
Pathak DT, Wei X, Bucuvalas A, Haft DH, Gerloff DL, Wall D
PMID: 22511878
PloS one. 2012-01-01; 7.3: e34581.
Decreased serologic response in vaccinated military recruits during 2011 correspond to genetic drift in concurrent circulating pandemic A/H1N1 viruses
Faix DJ, Hawksworth AW, Myers CA, Hansen CJ, Ortiguerra RG, Halpin R, Wentworth D, Pacha LA, Schwartz EG, Garcia SM, Eick-Cost AA, Clagett CD, Khurana S, Golding H, Blair PJ
PMID: 22514639
PLoS genetics. 2012-01-01; 8.7: e1002815.
RsfA (YbeB) proteins are conserved ribosomal silencing factors
Häuser R, Pech M, Kijek J, Yamamoto H, Titz B, Naeve F, Tovchigrechko A, Yamamoto K, Szaflarski W, Takeuchi N, Stellberger T, Diefenbacher ME, Nierhaus KH, Uetz P
PMID: 22829778
PloS one. 2012-01-01; 7.5: e33604.
Transcriptional and proteomic analysis of the Aspergillus fumigatus ΔprtT protease-deficient mutant
Hagag S, Kubitschek-Barreira P, Neves GW, Amar D, Nierman W, Shalit I, Shamir R, Lopes-Bezerra L, Osherov N
PMID: 22514608
PloS one. 2012-01-01; 7.5: e39315.
Evaluation of 16S rDNA-based community profiling for human microbiome research
Ward DV, Gevers D, Giannoukos G, Earl AM, Methé BA, Sodergren E, Feldgarden M, Ciulla DM, Tabbaa D, Arze C, Appelbaum E, Aird L, Anderson S, Ayvaz T, Belter E, Bihan M, Bloom T, Crabtree J, Courtney L, Carmichael L, Dooling D, Erlich RL, Farmer C, Fulton L, Fulton R, Gao H, Gill JA, Haas BJ, Hemphill L, Hall O, Hamilton SG, Hepburn TA, Lennon NJ, Joshi V, Kells C, Kovar CL, Kalra D, Li K, Lewis L, Leonard S, Muzny DM, Mardis E, Mihindukulasuriya K, Magrini V, O'Laughlin M, Pohl C, Qin X, Ross K, Ross MC, Rogers YH, Singh N, Shang Y, Wilczek-Boney K, Wortman JR, Worley KC, Youmans BP, Yooseph S, Zhou Y, Schloss PD, Wilson R, Gibbs RA, Nelson KE, Weinstock G, DeSantis TZ, Petrosino JF, Highlander SK, Birren BW
PMID: 22720093
PloS one. 2012-01-01; 7.5: e41294.
The "most wanted" taxa from the human microbiome for whole genome sequencing
Fodor AA, DeSantis TZ, Wylie KM, Badger JH, Ye Y, Hepburn T, Hu P, Sodergren E, Liolios K, Huot-Creasy H, Birren BW, Earl AM
PMID: 22848458
Journal of bacteriology. 2012-01-01; 194.2: 376-94.
A Rickettsia genome overrun by mobile genetic elements provides insight into the acquisition of genes characteristic of an obligate intracellular lifestyle
Gillespie JJ, Joardar V, Williams KP, Driscoll T, Hostetler JB, Nordberg E, Shukla M, Walenz B, Hill CA, Nene VM, Azad AF, Sobral BW, Caler E
PMID: 22056929
Scientific reports. 2012-01-01; 2.490.
Metagenomes of Mediterranean coastal lagoons
Ghai R, Hernandez CM, Picazo A, Mizuno CM, Ininbergs K, Díez B, Valas R, Dupont CL, McMahon KD, Camacho A, Rodriguez-Valera F
PMID: 22778901

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