Publications

BMC genomics. 2013-10-10; 14.693.
Inter- and intra-specific pan-genomes of Borrelia burgdorferi sensu lato: genome stability and adaptive radiation
Mongodin EF, Casjens SR, Bruno JF, Xu Y, Drabek EF, Riley DR, Cantarel BL, Pagan PE, Hernandez YA, Vargas LC, Dunn JJ, Schutzer SE, Fraser CM, Qiu WG, Luft BJ
PMID: 24112474
PLoS neglected tropical diseases. 2013-10-03; 7.10: e2468.
Pathogenomic inference of virulence-associated genes in Leptospira interrogans
Lehmann JS, Fouts DE, Haft DH, Cannella AP, Ricaldi JN, Brinkac L, Harkins D, Durkin S, Sanka R, Sutton G, Moreno A, Vinetz JM, Matthias MA
PMID: 24098822
Microbiome. 2013-10-02; 1.1: 25.
An in vitro biofilm model system maintaining a highly reproducible species and metabolic diversity approaching that of the human oral microbiome
Edlund A, Yang Y, Hall AP, Guo L, Lux R, He X, Nelson KE, Nealson KH, Yooseph S, Shi W, McLean JS
PMID: 24451062
Current opinion in microbiology. 2013-10-01; 16.5: 605-17.
Lineage specific gene family enrichment at the microscale in marine systems
Allen AE, Allen LZ, McCrow JP
PMID: 24377115
Antimicrobial agents and chemotherapy. 2013-10-01; 57.10: 4831-40.
Unique structural modifications are present in the lipopolysaccharide from colistin-resistant strains of Acinetobacter baumannii
Pelletier MR, Casella LG, Jones JW, Adams MD, Zurawski DV, Hazlett KR, Doi Y, Ernst RK
PMID: 23877686
The New phytologist. 2013-10-01; 200.1: 74-85.
The trade-off between the light-harvesting and photoprotective functions of fucoxanthin-chlorophyll proteins dominates light acclimation in Emiliania huxleyi (clone CCMP 1516)
McKew BA, Davey P, Finch SJ, Hopkins J, Lefebvre SC, Metodiev MV, Oxborough K, Raines CA, Lawson T, Geider RJ
PMID: 23790241
The New phytologist. 2013-10-01; 200.1: 61-73.
Plasticity in the proteome of Emiliania huxleyi CCMP 1516 to extremes of light is highly targeted
McKew BA, Lefebvre SC, Achterberg EP, Metodieva G, Raines CA, Metodiev MV, Geider RJ
PMID: 23750769
Nature genetics. 2013-10-01; 45.10: 1190-7.
Evolution of high-level ethambutol-resistant tuberculosis through interacting mutations in decaprenylphosphoryl-β-D-arabinose biosynthetic and utilization pathway genes
Safi H, Lingaraju S, Amin A, Kim S, Jones M, Holmes M, McNeil M, Peterson SN, Chatterjee D, Fleischmann R, Alland D
PMID: 23995136
BMC bioinformatics. 2013-09-08; 14.269.
Efficient alignment of RNA secondary structures using sparse dynamic programming
Zhong C, Zhang S
PMID: 24011432
Science translational medicine. 2013-09-04; 5.201: 201ra120.
Hedgehog agonist therapy corrects structural and cognitive deficits in a Down syndrome mouse model
Das I, Park JM, Shin JH, Jeon SK, Lorenzi H, Linden DJ, Worley PF, Reeves RH
PMID: 24005160