Publications

Standards in genomic sciences. 2013-07-30; 8.3: 561-70.
Prokaryotic Super Program Advisory Committee DOE Joint Genome Institute, Walnut Creek, CA, March 27, 2013
Garrity GM, Banfield J, Eisen J, van der Lelie N, McMahon T, Rusch D, Delong E, Moran MA, Currie C, Furhman J, Hallam S, Hugenholtz P, Moran N, Nelson K, Roberts R, Stepanauskas R
PMID: 24501639
Genome biology. 2013-07-26; 14.7: R77.
The genome and transcriptome of the enteric parasite Entamoeba invadens, a model for encystation
Ehrenkaufer GM, Weedall GD, Williams D, Lorenzi HA, Caler E, Hall N, Singh U
PMID: 23889909
Nature. 2013-07-11; 499.7457: 209-13.
Pan genome of the phytoplankton Emiliania underpins its global distribution
Allen AE, Bidle K, Borodovsky M, Bowler C, Brownlee C, Cock JM, Elias M, Gladyshev VN, Groth M, Guda C, Hadaegh A, Iglesias-Rodriguez MD, Jenkins J, Jones BM, Lawson T, Leese F, Lindquist E, Lobanov A, Lomsadze A, Malik SB, Marsh ME, Mackinder L, Mock T, Mueller-Roeber B, Pagarete A, Parker M, Probert I, Quesneville H, Raines C, Rensing SA, Riaño-Pachón DM, Richier S, Rokitta S, Shiraiwa Y, Soanes DM, van der Giezen M, Wahlund TM, Williams B, Wilson W, Wolfe G, Wurch LL
PMID: 23760476
Source code for biology and medicine. 2013-07-03; 8.1: 14.
GenePattern flow cytometry suite
Spidlen J, Barsky A, Breuer K, Carr P, Nazaire MD, Hill BA, Qian Y, Liefeld T, Reich M, Mesirov JP, Wilkinson P, Scheuermann RH, Sekaly RP, Brinkman RR
PMID: 23822732
Journal of biological engineering. 2013-07-02; 7.1: 17.
Dual organism design cycle reveals small subunit substitutions that improve [NiFe] hydrogenase hydrogen evolution
Yonemoto IT, Matteri CW, Nguyen TA, Smith HO, Weyman PD
PMID: 23819621
Journal of virology. 2013-07-01; 87.14: 8064-74.
Sequence analysis of in vivo defective interfering-like RNA of influenza A H1N1 pandemic virus
Munroe D, Saira K, Rappoport C, Lin X, Schwarze S, DePasse JV, Aagaard B, Halpin R, Adzic D, Twaddle A, Grarup J, Stockwell T, Herrero P, Angus B, Jansson P, Cozzi-Lepri A, Kjær J, Delfino M, Jakobsen M, Dugan V, Jensen B, Dwyer DE, Jensen K, Freiberg M, Juncher H, Horban A, Lopez P, Losso M, Mocroft A, Lynfield R, Pearson M, Wentworth DN, Portas B, Holmes EC, Sabin C, Davey R, Tillmann K, Wentworth DE, Babiker A, Ghedin E, Braimah N, INSIGHT FLU002 Study Group, Collaco-Moraes Y, INSIGHT FLU003 Study Group, Hudson F, Kummeling I, Pacciarini F, Paton N, DuChene A, George M, Harrison M, Krum E, Larson G, Nelson R, Quan K, Quan S, Reilly C, Schultz T, Thompson G, Wyman N, Avihingsanon A, Cassar L, Charoentonpuban K, Emery S, Laohajinda K, Jupimai T, Lanusse I, Moricz A, Otegui I, Ruxrungtham K, Robson R, Finley E, Gordin F, Sanchez A, Vjecha M, Baxter J, Brown S, Hoover M, Baseler B, Metcalf J, Cox N, Gubareva L, Hancock K, Katz J, Klimov A, Shaw M, Rubinson L, Barcan L, Corral J, David D, Laplume H, Lasala M, Lopardo G, Losso M, Lupo S, Warley E, Bloch M, Dwyer D, Moore R, Pett S, Roth N, Soo T, Vlahakis E, Burgmann H, Clumeck N, De Wit S, Florence E, Kabeya K, Weckx J, Perez C, Wolff M, Gerstoft J, Lundgren J, Ostergaard L, Zilmer K, Bogner J, Brockmeyer N, Faetkenheuer G, Klinker H, Plettenberg A, Rockstroh J, Stephan C, Antoniadou A, Koratzanis G, Koulouris N, Polixronopoulos V, Sambatakou H, Vasilopoulos N, Caplinskas S, La Rosa A, Mendo F, Salazar R, Valencia J, Bakowska E, Horban A, Knysz B, Antunes F, Doroana M, Padayatchi N, Dalmau D, Fernandez-Cruz E, Gatell J, Sanz J, Soriano V, Chetchotisakd P, Suwanpimolkul G, Leen C, Cohen C, Cohn D, DeHovitz J, El-Sadr W, Glesby M, Gordin F, Hodder S, Markowitz N, Novak R, Schooley R, Simon G, Tedaldi E, Temesgen Z, Timpone J, Uslan D, Wade B, Elliott J, Konecny P, McBride J, Jorens P, Wu T, Mathiesen L, Nielsen H, Pedersen S, Bergmann F, Maagaard A, Estrada V, Freud H, Garrido R, Moreno J, Pano-Pardo J, Angus B, Chadwick D, Dockrell D, Newport M, Wilkins E, Anderson H, Baker J, El-Sadr WA, Freiberg M, Gulick R, Gurka D, Paez A, Patil N, Reboli A, Sands M
PMID: 23678180
World journal of microbiology & biotechnology. 2013-07-01; 29.7: 1225-32.
Increasing reducing power output (NADH) of glucose catabolism for reduction of xylose to xylitol by genetically engineered Escherichia coli AI05
Iverson A, Garza E, Zhao J, Wang Y, Zhao X, Wang J, Manow R, Zhou S
PMID: 23435875
Environmental microbiology. 2013-07-01; 15.7: 2082-94.
The Montastraea faveolata microbiome: ecological and temporal influences on a Caribbean reef-building coral in decline
Kimes NE, Johnson WR, Torralba M, Nelson KE, Weil E, Morris PJ
PMID: 23750924
Nucleic acids research. 2013-07-01; 41.Web Server issue: W22-8.
aLeaves facilitates on-demand exploration of metazoan gene family trees on MAFFT sequence alignment server with enhanced interactivity
Kuraku S, Zmasek CM, Nishimura O, Katoh K
PMID: 23677614
The ISME journal. 2013-07-01; 7.7: 1344-53.
Habitat degradation impacts black howler monkey (Alouatta pigra) gastrointestinal microbiomes
Amato KR, Yeoman CJ, Kent A, Righini N, Carbonero F, Estrada A, Gaskins HR, Stumpf RM, Yildirim S, Torralba M, Gillis M, Wilson BA, Nelson KE, White BA, Leigh SR
PMID: 23486247