Publications

Nature methods. 2013-05-01; 10.5: 410-2.
Direct transfer of whole genomes from bacteria to yeast
Karas BJ, Jablanovic J, Sun L, Ma L, Goldgof GM, Stam J, Ramon A, Manary MJ, Winzeler EA, Venter JC, Weyman PD, Gibson DG, Glass JI, Hutchison CA, Smith HO, Suzuki Y
PMID: 23542886
Genome research. 2013-05-01; 23.5: 867-77.
Genome of the pathogen Porphyromonas gingivalis recovered from a biofilm in a hospital sink using a high-throughput single-cell genomics platform
McLean JS, Lombardo MJ, Ziegler MG, Novotny M, Yee-Greenbaum J, Badger JH, Tesler G, Nurk S, Lesin V, Brami D, Hall AP, Edlund A, Allen LZ, Durkin S, Reed S, Torriani F, Nealson KH, Pevzner PA, Friedman R, Venter JC, Lasken RS
PMID: 23564253
Genome research. 2013-05-01; 23.5: 878-88.
Nearly finished genomes produced using gel microdroplet culturing reveal substantial intraspecies genomic diversity within the human microbiome
Fitzsimons MS, Novotny M, Lo CC, Dichosa AE, Yee-Greenbaum JL, Snook JP, Gu W, Chertkov O, Davenport KW, McMurry K, Reitenga KG, Daughton AR, He J, Johnson SL, Gleasner CD, Wills PL, Parson-Quintana B, Chain PS, Detter JC, Lasken RS, Han CS
PMID: 23493677
The New phytologist. 2013-04-01; 198.2: 398-407.
Transcriptomic analysis of metabolic function in the giant kelp, Macrocystis pyrifera, across depth and season
Konotchick T, Dupont CL, Valas RE, Badger JH, Allen AE
PMID: 23488966
The FEBS journal. 2013-04-01; 280.8: 1750-63.
Structural analysis of the Rhizoctonia solani agglutinin reveals a domain-swapping dimeric assembly
Skamnaki VT, Peumans WJ, Kantsadi AL, Cubeta MA, Plas K, Pakala S, Zographos SE, Smagghe G, Nierman WC, Van Damme EJ, Leonidas DD
PMID: 23402398
Microbial ecology. 2013-04-01; 65.3: 773-80.
The restoration of the vaginal microbiota after treatment for bacterial vaginosis with metronidazole or probiotics
Ling Z, Liu X, Chen W, Luo Y, Yuan L, Xia Y, Nelson KE, Huang S, Zhang S, Wang Y, Yuan J, Li L, Xiang C
PMID: 23250116
Nucleic acids research. 2013-04-01; 41.8: e91.
SPA: a short peptide assembler for metagenomic data
Yang Y, Yooseph S
PMID: 23435317
Proceedings of the National Academy of Sciences of the United States of America. 2013-03-26; 110.13: 5010-5.
Molecular mechanism of quinone signaling mediated through S-quinonization of a YodB family repressor QsrR
Ji Q, Zhang L, Jones MB, Sun F, Deng X, Liang H, Cho H, Brugarolas P, Gao YN, Peterson SN, Lan L, Bae T, He C
PMID: 23479646
PLoS genetics. 2013-03-14; 9.3: e1003309.
Complex patterns of genomic admixture within southern Africa
Petersen DC, Libiger O, Tindall EA, Hardie RA, Hannick LI, Glashoff RH, Mukerji M, Indian Genome Variation Consortium, Fernandez P, Haacke W, Schork NJ, Hayes VM
PMID: 23516368
Genome announcements. 2013-03-14; 1.2: e0004413.
Genome Sequence of the Group III Clostridium botulinum Strain Eklund-C
Hassan KA, Tetu SG, Elbourne LD, Johnson EA, Paulsen IT
PMID: 23516187