Publications

Virology journal. 2013-05-28; 10.165.
Whole genome sequencing and comparative genomic analyses of two Vibrio cholerae O139 Bengal-specific Podoviruses to other N4-like phages reveal extensive genetic diversity
Fouts DE, Klumpp J, Bishop-Lilly KA, Rajavel M, Willner KM, Butani A, Henry M, Biswas B, Li M, Albert MJ, Loessner MJ, Calendar R, Sozhamannan S
PMID: 23714204
Journal of visualized experiments : JoVE. 2013-05-26; 75: e3899.
Isolation and genome analysis of single virions using 'single virus genomics'
Zeigler Allen L, Ishoey T, Novotny MA, McLean JS, Lasken RS, Williamson SJ
PMID: 23728084
Science translational medicine. 2013-05-15; 5.185: 185ra68.
Synthetic generation of influenza vaccine viruses for rapid response to pandemics
Dormitzer PR, Suphaphiphat P, Gibson DG, Wentworth DE, Stockwell TB, Algire MA, Alperovich N, Barro M, Brown DM, Craig S, Dattilo BM, Denisova EA, De Souza I, Eickmann M, Dugan VG, Ferrari A, Gomila RC, Han L, Judge C, Mane S, Matrosovich M, Merryman C, Palladino G, Palmer GA, Spencer T, Strecker T, Trusheim H, Uhlendorff J, Wen Y, Yee AC, Zaveri J, Zhou B, Becker S, Donabedian A, Mason PW, Glass JI, Rappuoli R, Venter JC
PMID: 23677594
BMC bioinformatics. 2013-05-13; 14.158.
Phylotastic! Making tree-of-life knowledge accessible, reusable and convenient
Stoltzfus A, Lapp H, Matasci N, Deus H, Sidlauskas B, Zmasek CM, Vaidya G, Pontelli E, Cranston K, Vos R, Webb CO, Harmon LJ, Pirrung M, O'Meara B, Pennell MW, Mirarab S, Rosenberg MS, Balhoff JP, Bik HM, Heath TA, Midford PE, Brown JW, McTavish EJ, Sukumaran J, Westneat M, Alfaro ME, Steele A, Jordan G
PMID: 23668630
BMC research notes. 2013-05-03; 6.177.
Rapid research response to the 2009 A(H1N1)pdm09 influenza pandemic (Revised)
Keitel WA, Piedra PA, Atmar RL, Demmler G, El Sahly HM, Barrett J, Halpin RA, Lagos R, Fisher-Hoch S, Munoz F
PMID: 23641940
Environmental microbiology. 2013-05-01; 15.5: 1318-33.
Biogeographic partitioning of Southern Ocean microorganisms revealed by metagenomics
Wilkins D, Lauro FM, Williams TJ, DeMaere MZ, Brown MV, Hoffman JM, Andrews-Pfannkoch C, McQuaid JB, Riddle MJ, Rintoul SR, Cavicchioli R
PMID: 23199136
Genome research. 2013-05-01; 23.5: 878-88.
Nearly finished genomes produced using gel microdroplet culturing reveal substantial intraspecies genomic diversity within the human microbiome
Fitzsimons MS, Novotny M, Lo CC, Dichosa AE, Yee-Greenbaum JL, Snook JP, Gu W, Chertkov O, Davenport KW, McMurry K, Reitenga KG, Daughton AR, He J, Johnson SL, Gleasner CD, Wills PL, Parson-Quintana B, Chain PS, Detter JC, Lasken RS, Han CS
PMID: 23493677
Genome research. 2013-05-01; 23.5: 826-32.
Sequencing of isolated sperm cells for direct haplotyping of a human genome
Kirkness EF, Grindberg RV, Yee-Greenbaum J, Marshall CR, Scherer SW, Lasken RS, Venter JC
PMID: 23282328
Applied and environmental microbiology. 2013-05-01; 79.9: 2932-43.
Comparative genomic analysis of phylogenetically closely related Hydrogenobaculum sp. isolates from Yellowstone National Park
Romano C, D'Imperio S, Woyke T, Mavromatis K, Lasken R, Shock EL, McDermott TR
PMID: 23435891
Genome research. 2013-05-01; 23.5: 867-77.
Genome of the pathogen Porphyromonas gingivalis recovered from a biofilm in a hospital sink using a high-throughput single-cell genomics platform
McLean JS, Lombardo MJ, Ziegler MG, Novotny M, Yee-Greenbaum J, Badger JH, Tesler G, Nurk S, Lesin V, Brami D, Hall AP, Edlund A, Allen LZ, Durkin S, Reed S, Torriani F, Nealson KH, Pevzner PA, Friedman R, Venter JC, Lasken RS
PMID: 23564253