Publications

Nature methods. 2013-03-01; 10.3: 228-38.
Critical assessment of automated flow cytometry data analysis techniques
Aghaeepour N, Finak G, FlowCAP Consortium, DREAM Consortium, Hoos H, Mosmann TR, Brinkman R, Gottardo R, Scheuermann RH
PMID: 23396282
Cold Spring Harbor perspectives in biology. 2013-03-01; 5.3: a008649.
Evolution of the animal apoptosis network
Zmasek CM, Godzik A
PMID: 23457257
Nature biotechnology. 2013-03-01; 31.3: 211-2.
Single-cell sequencing in its prime
Lasken RS
PMID: 23471069
Genome announcements. 2013-02-28; 1.2: e0013412.
Whole-Genome Draft Sequences of 26 Enterohemorrhagic Escherichia coli O157:H7 Strains
Eppinger M, Daugherty S, Agrawal S, Galens K, Sengamalay N, Sadzewicz L, Tallon L, Cebula TA, Mammel MK, Feng P, Soderlund R, Tarr PI, DebRoy C, Dudley EG, Fraser CM, Ravel J
PMID: 23516226
Genome announcements. 2013-02-21; 1.1:
Draft Genome Sequence of Enterococcus faecalis PC1.1, a Candidate Probiotic Strain Isolated from Human Feces
O Cuív P, Klaassens ES, Smith WJ, Mondot S, Durkin AS, Harkins DM, Foster L, McCorrison J, Torralba M, Nelson KE, Morrison M
PMID: 23469340
Journal of biomedical semantics. 2013-02-11; 4.1: 6.
The 3rd DBCLS BioHackathon: improving life science data integration with Semantic Web technologies
Katayama T, Wilkinson MD, Micklem G, Kawashima S, Yamaguchi A, Nakao M, Yamamoto Y, Okamoto S, Oouchida K, Chun HW, Aerts J, Afzal H, Antezana E, Arakawa K, Aranda B, Belleau F, Bolleman J, Bonnal RJ, Chapman B, Cock PJ, Eriksson T, Gordon PM, Goto N, Hayashi K, Horn H, Ishiwata R, Kaminuma E, Kasprzyk A, Kawaji H, Kido N, Kim YJ, Kinjo AR, Konishi F, Kwon KH, Labarga A, Lamprecht AL, Lin Y, Lindenbaum P, McCarthy L, Morita H, Murakami K, Nagao K, Nishida K, Nishimura K, Nishizawa T, Ogishima S, Ono K, Oshita K, Park KJ, Prins P, Saito TL, Samwald M, Satagopam VP, Shigemoto Y, Smith R, Splendiani A, Sugawara H, Taylor J, Vos RA, Withers D, Yamasaki C, Zmasek CM, Kawamoto S, Okubo K, Asai K, Takagi T
PMID: 23398680
Genome biology. 2013-02-01; 14.2: R11.
Genome of Acanthamoeba castellanii highlights extensive lateral gene transfer and early evolution of tyrosine kinase signaling
Clarke M, Lohan AJ, Liu B, Lagkouvardos I, Roy S, Zafar N, Bertelli C, Schilde C, Kianianmomeni A, Bürglin TR, Frech C, Turcotte B, Kopec KO, Synnott JM, Choo C, Paponov I, Finkler A, Heng Tan CS, Hutchins AP, Weinmeier T, Rattei T, Chu JS, Gimenez G, Irimia M, Rigden DJ, Fitzpatrick DA, Lorenzo-Morales J, Bateman A, Chiu CH, Tang P, Hegemann P, Fromm H, Raoult D, Greub G, Miranda-Saavedra D, Chen N, Nash P, Ginger ML, Horn M, Schaap P, Caler L, Loftus BJ
PMID: 23375108
Molecular microbiology. 2013-02-01; 87.3: 672-89.
The group A streptococcal collagen-like protein-1, Scl1, mediates biofilm formation by targeting the extra domain A-containing variant of cellular fibronectin expressed in wounded tissue
Oliver-Kozup H, Martin KH, Schwegler-Berry D, Green BJ, Betts C, Shinde AV, Van De Water L, Lukomski S
PMID: 23217101
Molecular bioSystems. 2013-01-27; 9.1: 44-54.
A multi-omic systems approach to elucidating Yersinia virulence mechanisms
Ansong C, Schrimpe-Rutledge AC, Mitchell HD, Chauhan S, Jones MB, Kim YM, McAteer K, Deatherage Kaiser BL, Dubois JL, Brewer HM, Frank BC, McDermott JE, Metz TO, Peterson SN, Smith RD, Motin VL, Adkins JN
PMID: 23147219
Virology journal. 2013-01-25; 10.32.
Analysis of whole genome sequences of 16 strains of rubella virus from the United States, 1961-2009
Abernathy E, Chen MH, Bera J, Shrivastava S, Kirkness E, Zheng Q, Bellini W, Icenogle J
PMID: 23351667