Publications

Journal of industrial microbiology & biotechnology. 2012-07-01; 39.7: 977-85.
Partial deletion of rng (RNase G)-enhanced homoethanol fermentation of xylose by the non-transgenic Escherichia coli RM10
Manow R, Wang J, Wang Y, Zhao J, Garza E, Iverson A, Finan C, Grayburn S, Zhou S
PMID: 22374228
PLoS genetics. 2012-07-01; 8.7: e1002784.
Comparative genomics of plant-associated Pseudomonas spp.: insights into diversity and inheritance of traits involved in multitrophic interactions
Loper JE, Hassan KA, Mavrodi DV, Davis EW, Lim CK, Shaffer BT, Elbourne LD, Stockwell VO, Hartney SL, Breakwell K, Henkels MD, Tetu SG, Rangel LI, Kidarsa TA, Wilson NL, van de Mortel JE, Song C, Blumhagen R, Radune D, Hostetler JB, Brinkac LM, Durkin AS, Kluepfel DA, Wechter WP, Anderson AJ, Kim YC, Pierson LS, Pierson EA, Lindow SE, Kobayashi DY, Raaijmakers JM, Weller DM, Thomashow LS, Allen AE, Paulsen IT
PMID: 22792073
Nature biotechnology. 2012-07-01; 30.7: 693-700.
Hybrid error correction and de novo assembly of single-molecule sequencing reads
Koren S, Schatz MC, Walenz BP, Martin J, Howard JT, Ganapathy G, Wang Z, Rasko DA, McCombie WR, Jarvis ED, Adam M Phillippy
PMID: 22750884
Journal of the American Veterinary Medical Association. 2012-07-01; 241.1: 66-72.
Effects of canine parvovirus strain variations on diagnostic test results and clinical management of enteritis in dogs
Markovich JE, Stucker KM, Carr AH, Harbison CE, Scarlett JM, Parrish CR
PMID: 22720989
Trends in plant science. 2012-07-01; 17.7: 395-403.
Leveraging metabolomics for functional investigations in sequenced marine diatoms
Fernie AR, Obata T, Allen AE, Araújo WL, Bowler C
PMID: 22465020
Bacteriophage. 2012-07-01; 2.3: 190-199.
Next generation sequencing technologies and the changing landscape of phage genomics
Klumpp J, Fouts DE, Sozhamannan S
PMID: 23275870
Nature. 2012-06-28; 486.7404: 527-31.
The bonobo genome compared with the chimpanzee and human genomes
Prüfer K, Munch K, Hellmann I, Akagi K, Miller JR, Walenz B, Koren S, Sutton G, Kodira C, Winer R, Knight JR, Mullikin JC, Meader SJ, Ponting CP, Lunter G, Higashino S, Hobolth A, Dutheil J, Karakoç E, Alkan C, Sajjadian S, Catacchio CR, Ventura M, Marques-Bonet T, Eichler EE, André C, Atencia R, Mugisha L, Junhold J, Patterson N, Siebauer M, Good JM, Fischer A, Ptak SE, Lachmann M, Symer DE, Mailund T, Schierup MH, Andrés AM, Kelso J, Pääbo S
PMID: 22722832
Molecular systems biology. 2012-06-26; 8.558.
Model-driven multi-omic data analysis elucidates metabolic immunomodulators of macrophage activation
Bordbar A, Mo ML, Nakayasu ES, Schrimpe-Rutledge AC, Kim YM, Metz TO, Jones MB, Frank BC, Smith RD, Peterson SN, Hyduke DR, Adkins JN, Palsson BO
PMID: 22735334
Proceedings of the National Academy of Sciences of the United States of America. 2012-06-26; 109.26: E1762-71.
Influence of cobalamin scarcity on diatom molecular physiology and identification of a cobalamin acquisition protein
Bertrand EM, Allen AE, Dupont CL, Norden-Krichmar TM, Bai J, Valas RE, Saito MA
PMID: 22652568
Proceedings of the National Academy of Sciences of the United States of America. 2012-06-19; 109.25: 9692-8.
Quantification of the relative roles of niche and neutral processes in structuring gastrointestinal microbiomes
Jeraldo P, Sipos M, Chia N, Brulc JM, Dhillon AS, Konkel ME, Larson CL, Nelson KE, Qu A, Schook LB, Yang F, White BA, Goldenfeld N
PMID: 22615407