Publications

The Journal of general virology. 2012-08-01; 93.Pt 8: 1649-57.

Low-pathogenic avian influenza virus A/turkey/Ontario/6213/1966 (H5N1) is the progenitor of highly pathogenic A/turkey/Ontario/7732/1966 (H5N9)

Ping J, Selman M, Tyler S, Forbes N, Keleta L, Brown EG

PMID: 22592261

BMC microbiology. 2012-07-27; 12.151.

A Multilocus Sequence Typing System (MLST) reveals a high level of diversity and a genetic component to Entamoeba histolytica virulence

Gilchrist CA, Ali IK, Kabir M, Alam F, Scherbakova S, Ferlanti E, Weedall GD, Hall N, Haque R, Petri WA, Caler E

PMID: 22839995

ACS synthetic biology. 2012-07-20; 1.7: 267-73.

Assembly of large, high G+C bacterial DNA fragments in yeast

Noskov VN, Karas BJ, Young L, Chuang RY, Gibson DG, Lin YC, Stam J, Yonemoto IT, Suzuki Y, Andrews-Pfannkoch C, Glass JI, Smith HO, Hutchison CA, Venter JC, Weyman PD

PMID: 23651249

Cell. 2012-07-20; 150.2: 389-401.

A whole-cell computational model predicts phenotype from genotype

Karr JR, Sanghvi JC, Macklin DN, Gutschow MV, Jacobs JM, Bolival B, Assad-Garcia N, Glass JI, Covert MW

PMID: 22817898

Journal of molecular biology. 2012-07-20; 420.4-5: 366-83.

Structural and functional characterization of microcin C resistance peptidase MccF from Bacillus anthracis

Nocek B, Tikhonov A, Babnigg G, Gu M, Zhou M, Makarova KS, Vondenhoff G, Van Aerschot A, Kwon K, Anderson WF, Severinov K, Joachimiak A

PMID: 22516613

Molecular systems biology. 2012-07-17; 8.595.

Global biogeography of SAR11 marine bacteria

Brown MV, Lauro FM, DeMaere MZ, Muir L, Wilkins D, Thomas T, Riddle MJ, Fuhrman JA, Andrews-Pfannkoch C, Hoffman JM, McQuaid JB, Allen A, Rintoul SR, Cavicchioli R

PMID: 22806143

Nature biotechnology. 2012-07-01; 30.7: 693-700.

Hybrid error correction and de novo assembly of single-molecule sequencing reads

Koren S, Schatz MC, Walenz BP, Martin J, Howard JT, Ganapathy G, Wang Z, Rasko DA, McCombie WR, Jarvis ED, Adam M Phillippy

PMID: 22750884

Emerging infectious diseases. 2012-07-01; 18.7: 1089-95.

Spike protein fusion peptide and feline coronavirus virulence

Chang HW, Egberink HF, Halpin R, Spiro DJ, Rottier PJ

PMID: 22709821

The ISME journal. 2012-07-01; 6.7: 1403-14.

Influence of nutrients and currents on the genomic composition of microbes across an upwelling mosaic

Zeigler Allen L, Allen EE, Badger JH, McCrow JP, Paulsen IT, Elbourne LD, Thiagarajan M, Rusch DB, Nealson KH, Williamson SJ, Venter JC, Allen AE

PMID: 22278668

Bacteriophage. 2012-07-01; 2.3: 190-199.

Next generation sequencing technologies and the changing landscape of phage genomics

Klumpp J, Fouts DE, Sozhamannan S

PMID: 23275870