Publications

Infection and immunity. 2009-02-01; 77.2: 642-56.
Comparative genomics reveal extensive transposon-mediated genomic plasticity and diversity among potential effector proteins within the genus Coxiella
Beare PA, Unsworth N, Andoh M, Voth DE, Omsland A, Gilk SD, Williams KP, Sobral BW, Kupko JJ, Porcella SF, Samuel JE, Heinzen RA
PMID: 19047403
PLoS computational biology. 2009-02-01; 5.2: e1000285.
A genome-scale metabolic reconstruction of Mycoplasma genitalium, iPS189
Suthers PF, Dasika MS, Kumar VS, Denisov G, Glass JI, Maranas CD
PMID: 19214212
Microbiology (Reading, England). 2009-02-01; 155.Pt 2: 498-512.
Temperature and growth phase influence the outer-membrane proteome and the expression of a type VI secretion system in Yersinia pestis
Pieper R, Huang ST, Robinson JM, Clark DJ, Alami H, Parmar PP, Perry RD, Fleischmann RD, Peterson SN
PMID: 19202098
Environmental microbiology. 2009-02-01; 11.2: 349-59.
Coastal Synechococcus metagenome reveals major roles for horizontal gene transfer and plasmids in population diversity
Palenik B, Ren Q, Tai V, Paulsen IT
PMID: 19196269
The Journal of biological chemistry. 2009-01-09; 284.2: 1086-96.
Regulation of the xylan-degrading apparatus of Cellvibrio japonicus by a novel two-component system
Emami K, Topakas E, Nagy T, Henshaw J, Jackson KA, Nelson KE, Mongodin EF, Murray JW, Lewis RJ, Gilbert HJ
PMID: 18922794
PloS one. 2009-01-01; 4.5: e5519.
Genome degradation in Brucella ovis corresponds with narrowing of its host range and tissue tropism
Tsolis RM, Seshadri R, Santos RL, Sangari FJ, Lobo JM, de Jong MF, Ren Q, Myers G, Brinkac LM, Nelson WC, Deboy RT, Angiuoli S, Khouri H, Dimitrov G, Robinson JR, Mulligan S, Walker RL, Elzer PE, Hassan KA, Paulsen IT
PMID: 19436743
Nature protocols. 2009-01-01; 4.7: 1073-81.
Predicting the effects of coding non-synonymous variants on protein function using the SIFT algorithm
Kumar P, Henikoff S, Ng PC
PMID: 19561590
Methods in molecular biology (Clifton, N.J.). 2009-01-01; 548.223-45.
Analysis of protein-protein interactions using array-based yeast two-hybrid screens
Rajagopala SV, Uetz P
PMID: 19521828
Nucleic acids research. 2009-01-01; 37.Database issue: D464-70.
EcoCyc: a comprehensive view of Escherichia coli biology
Keseler IM, Bonavides-Martínez C, Collado-Vides J, Gama-Castro S, Gunsalus RP, Johnson DA, Krummenacker M, Nolan LM, Paley S, Paulsen IT, Peralta-Gil M, Santos-Zavaleta A, Shearer AG, Karp PD
PMID: 18974181
Medical mycology. 2009-01-01; 47 Suppl 1.S34-41.
Using aCGH to study intraspecific genetic variability in two pathogenic molds, Aspergillus fumigatus and Aspergillus flavus
Fedorova ND, Harris S, Chen D, Denning DW, Yu J, Cotty PJ, Nierman WC
PMID: 19291596