Publications

Microbiology (Reading, England). 2009-02-01; 155.Pt 2: 498-512.
Temperature and growth phase influence the outer-membrane proteome and the expression of a type VI secretion system in Yersinia pestis
Pieper R, Huang ST, Robinson JM, Clark DJ, Alami H, Parmar PP, Perry RD, Fleischmann RD, Peterson SN
PMID: 19202098
PLoS computational biology. 2009-02-01; 5.2: e1000285.
A genome-scale metabolic reconstruction of Mycoplasma genitalium, iPS189
Suthers PF, Dasika MS, Kumar VS, Denisov G, Glass JI, Maranas CD
PMID: 19214212
Environmental microbiology. 2009-02-01; 11.2: 349-59.
Coastal Synechococcus metagenome reveals major roles for horizontal gene transfer and plasmids in population diversity
Palenik B, Ren Q, Tai V, Paulsen IT
PMID: 19196269
Infection and immunity. 2009-02-01; 77.2: 642-56.
Comparative genomics reveal extensive transposon-mediated genomic plasticity and diversity among potential effector proteins within the genus Coxiella
Beare PA, Unsworth N, Andoh M, Voth DE, Omsland A, Gilk SD, Williams KP, Sobral BW, Kupko JJ, Porcella SF, Samuel JE, Heinzen RA
PMID: 19047403
The Journal of biological chemistry. 2009-01-09; 284.2: 1086-96.
Regulation of the xylan-degrading apparatus of Cellvibrio japonicus by a novel two-component system
Emami K, Topakas E, Nagy T, Henshaw J, Jackson KA, Nelson KE, Mongodin EF, Murray JW, Lewis RJ, Gilbert HJ
PMID: 18922794
Nucleic acids research. 2009-01-01; 37.Database issue: D509-14.
Aspergillus genomes and the Aspergillus cloud
Mabey Gilsenan JE, Atherton G, Bartholomew J, Giles PF, Attwood TK, Denning DW, Bowyer P
PMID: 19039001
Eukaryotic cell. 2009-01-01; 8.1: 104-15.
Transcriptional profiling identifies a role for BrlA in the response to nitrogen depletion and for StuA in the regulation of secondary metabolite clusters in Aspergillus fumigatus
Twumasi-Boateng K, Yu Y, Chen D, Gravelat FN, Nierman WC, Sheppard DC
PMID: 19028996
Nucleic acids research. 2009-01-01; 37.Database issue: D464-70.
EcoCyc: a comprehensive view of Escherichia coli biology
Keseler IM, Bonavides-Martínez C, Collado-Vides J, Gama-Castro S, Gunsalus RP, Johnson DA, Krummenacker M, Nolan LM, Paley S, Paulsen IT, Peralta-Gil M, Santos-Zavaleta A, Shearer AG, Karp PD
PMID: 18974181
Methods in molecular biology (Clifton, N.J.). 2009-01-01; 548.263-82.
Plant genome annotation methods
Ouyang S, Thibaud-Nissen F, Childs KL, Zhu W, Buell CR
PMID: 19347655
PloS one. 2009-01-01; 4.5: e5519.
Genome degradation in Brucella ovis corresponds with narrowing of its host range and tissue tropism
Tsolis RM, Seshadri R, Santos RL, Sangari FJ, Lobo JM, de Jong MF, Ren Q, Myers G, Brinkac LM, Nelson WC, Deboy RT, Angiuoli S, Khouri H, Dimitrov G, Robinson JR, Mulligan S, Walker RL, Elzer PE, Hassan KA, Paulsen IT
PMID: 19436743