Publications

PLoS computational biology. 2009-02-01; 5.2: e1000285.
A genome-scale metabolic reconstruction of Mycoplasma genitalium, iPS189
Suthers PF, Dasika MS, Kumar VS, Denisov G, Glass JI, Maranas CD
PMID: 19214212
Environmental microbiology. 2009-02-01; 11.2: 349-59.
Coastal Synechococcus metagenome reveals major roles for horizontal gene transfer and plasmids in population diversity
Palenik B, Ren Q, Tai V, Paulsen IT
PMID: 19196269
Microbiology (Reading, England). 2009-02-01; 155.Pt 2: 498-512.
Temperature and growth phase influence the outer-membrane proteome and the expression of a type VI secretion system in Yersinia pestis
Pieper R, Huang ST, Robinson JM, Clark DJ, Alami H, Parmar PP, Perry RD, Fleischmann RD, Peterson SN
PMID: 19202098
The Journal of biological chemistry. 2009-01-09; 284.2: 1086-96.
Regulation of the xylan-degrading apparatus of Cellvibrio japonicus by a novel two-component system
Emami K, Topakas E, Nagy T, Henshaw J, Jackson KA, Nelson KE, Mongodin EF, Murray JW, Lewis RJ, Gilbert HJ
PMID: 18922794
Combinatorial chemistry & high throughput screening. 2009-01-01; 12.1: 2-23.
Evolution of the human ion channel set
Jegla TJ, Zmasek CM, Batalov S, Nayak SK
PMID: 19149488
Eukaryotic cell. 2009-01-01; 8.1: 104-15.
Transcriptional profiling identifies a role for BrlA in the response to nitrogen depletion and for StuA in the regulation of secondary metabolite clusters in Aspergillus fumigatus
Twumasi-Boateng K, Yu Y, Chen D, Gravelat FN, Nierman WC, Sheppard DC
PMID: 19028996
PloS one. 2009-01-01; 4.5: e4207.
Complete genome sequence of the aerobic CO-oxidizing thermophile Thermomicrobium roseum
Wu D, Raymond J, Wu M, Chatterji S, Ren Q, Graham JE, Bryant DA, Robb F, Colman A, Tallon LJ, Badger JH, Madupu R, Ward NL, Eisen JA
PMID: 19148287
Genome biology. 2009-01-01; 10.3: R32.
Evaluation of next generation sequencing platforms for population targeted sequencing studies
Harismendy O, Ng PC, Strausberg RL, Wang X, Stockwell TB, Beeson KY, Schork NJ, Murray SS, Topol EJ, Levy S, Frazer KA
PMID: 19327155
Medical mycology. 2009-01-01; 47 Suppl 1.S34-41.
Using aCGH to study intraspecific genetic variability in two pathogenic molds, Aspergillus fumigatus and Aspergillus flavus
Fedorova ND, Harris S, Chen D, Denning DW, Yu J, Cotty PJ, Nierman WC
PMID: 19291596
Medical mycology. 2009-01-01; 47 Suppl 1.S88-96.
Effect of competition on the production and activity of secondary metabolites in Aspergillus species
Losada L, Ajayi O, Frisvad JC, Yu J, Nierman WC
PMID: 19255906