Publications

Journal of bacteriology. 2009-01-01; 191.1: 445-6.
The complete genome sequence of Bacillus anthracis Ames "Ancestor"
Ravel J, Jiang L, Stanley ST, Wilson MR, Decker RS, Read TD, Worsham P, Keim PS, Salzberg SL, Fraser-Liggett CM, Rasko DA
PMID: 18952800
PloS one. 2009-01-01; 4.5: e4207.
Complete genome sequence of the aerobic CO-oxidizing thermophile Thermomicrobium roseum
Wu D, Raymond J, Wu M, Chatterji S, Ren Q, Graham JE, Bryant DA, Robb F, Colman A, Tallon LJ, Badger JH, Madupu R, Ward NL, Eisen JA
PMID: 19148287
Genome biology. 2009-01-01; 10.3: R32.
Evaluation of next generation sequencing platforms for population targeted sequencing studies
Harismendy O, Ng PC, Strausberg RL, Wang X, Stockwell TB, Beeson KY, Schork NJ, Murray SS, Topol EJ, Levy S, Frazer KA
PMID: 19327155
Nucleic acids research. 2009-01-01; 37.Database issue: D211-5.
InterPro: the integrative protein signature database
Hunter S, Apweiler R, Attwood TK, Bairoch A, Bateman A, Binns D, Bork P, Das U, Daugherty L, Duquenne L, Finn RD, Gough J, Haft D, Hulo N, Kahn D, Kelly E, Laugraud A, Letunic I, Lonsdale D, Lopez R, Madera M, Maslen J, McAnulla C, McDowall J, Mistry J, Mitchell A, Mulder N, Natale D, Orengo C, Quinn AF, Selengut JD, Sigrist CJ, Thimma M, Thomas PD, Valentin F, Wilson D, Wu CH, Yeats C
PMID: 18940856
Medical mycology. 2009-01-01; 47 Suppl 1.S88-96.
Effect of competition on the production and activity of secondary metabolites in Aspergillus species
Losada L, Ajayi O, Frisvad JC, Yu J, Nierman WC
PMID: 19255906
Methods in molecular biology (Clifton, N.J.). 2009-01-01; 548.263-82.
Plant genome annotation methods
Ouyang S, Thibaud-Nissen F, Childs KL, Zhu W, Buell CR
PMID: 19347655
PloS one. 2009-01-01; 4.5: e5519.
Genome degradation in Brucella ovis corresponds with narrowing of its host range and tissue tropism
Tsolis RM, Seshadri R, Santos RL, Sangari FJ, Lobo JM, de Jong MF, Ren Q, Myers G, Brinkac LM, Nelson WC, Deboy RT, Angiuoli S, Khouri H, Dimitrov G, Robinson JR, Mulligan S, Walker RL, Elzer PE, Hassan KA, Paulsen IT
PMID: 19436743
Methods in molecular biology (Clifton, N.J.). 2009-01-01; 548.223-45.
Analysis of protein-protein interactions using array-based yeast two-hybrid screens
Rajagopala SV, Uetz P
PMID: 19521828
Nature protocols. 2009-01-01; 4.7: 1073-81.
Predicting the effects of coding non-synonymous variants on protein function using the SIFT algorithm
Kumar P, Henikoff S, Ng PC
PMID: 19561590
Nucleic acids research. 2009-01-01; 37.Database issue: D464-70.
EcoCyc: a comprehensive view of Escherichia coli biology
Keseler IM, Bonavides-Martínez C, Collado-Vides J, Gama-Castro S, Gunsalus RP, Johnson DA, Krummenacker M, Nolan LM, Paley S, Paulsen IT, Peralta-Gil M, Santos-Zavaleta A, Shearer AG, Karp PD
PMID: 18974181