Publications

Proteome science. 2012-04-30; 10.1: 30.

Development stage-specific proteomic profiling uncovers small, lineage specific proteins most abundant in the Aspergillus Fumigatus conidial proteome

Suh MJ, Fedorova ND, Cagas SE, Hastings S, Fleischmann RD, Peterson SN, Perlin DS, Nierman WC, Pieper R, Momany M

PMID: 22545825

Proceedings of the National Academy of Sciences of the United States of America. 2012-04-17; 109.16: 6036-41.

The costimulatory immunogen LPS induces the B-Cell clones that infiltrate transplanted human kidneys

Grover RK, Cheng J, Peng Y, Jones TM, Ruiz DI, Ulevitch RJ, Glass JI, Dennis EA, Salomon DR, Lerner RA

PMID: 22492977

Journal of biotechnology. 2012-04-15; 158.3: 144-50.

Triallelic SNP-mediated genotyping of regenerated protoplasts of the heterokaryotic fungus Rhizoctonia solani

Thomas E, Pakala S, Fedorova ND, Nierman WC, Cubeta MA

PMID: 22321572

BMC genomics. 2012-04-05; 13.131.

VESPA: software to facilitate genomic annotation of prokaryotic organisms through integration of proteomic and transcriptomic data

Peterson ES, McCue LA, Schrimpe-Rutledge AC, Jensen JL, Walker H, Kobold MA, Webb SR, Payne SH, Ansong C, Adkins JN, Cannon WR, Webb-Robertson BJ

PMID: 22480257

Genetics. 2012-04-01; 190.4: 1563-74.

Altered patterns of fractionation and exon deletions in Brassica rapa support a two-step model of paleohexaploidy

Tang H, Woodhouse MR, Cheng F, Schnable JC, Pedersen BS, Conant G, Wang X, Freeling M, Pires JC

PMID: 22308264

Journal of bacteriology. 2012-04-01; 194.8: 1885-96.

Escherichia coli serotype O55:H7 diversity supports parallel acquisition of bacteriophage at Shiga toxin phage insertion sites during evolution of the O157:H7 lineage

Kyle JL, Cummings CA, Parker CT, Quiñones B, Vatta P, Newton E, Huynh S, Swimley M, Degoricija L, Barker M, Fontanoz S, Nguyen K, Patel R, Fang R, Tebbs R, Petrauskene O, Furtado M, Mandrell RE

PMID: 22328665

Nature methods. 2012-04-01; 9.4: 345-50.

Protein interaction data curation: the International Molecular Exchange (IMEx) consortium

Orchard S, Kerrien S, Abbani S, Aranda B, Bhate J, Bidwell S, Bridge A, Briganti L, Brinkman FS, Brinkman F, Cesareni G, Chatr-aryamontri A, Chautard E, Chen C, Dumousseau M, Goll J, Hancock RE, Hancock R, Hannick LI, Jurisica I, Khadake J, Lynn DJ, Mahadevan U, Perfetto L, Raghunath A, Ricard-Blum S, Roechert B, Salwinski L, Stümpflen V, Tyers M, Uetz P, Xenarios I, Hermjakob H

PMID: 22453911

Journal of bacteriology. 2012-04-01; 194.8: 2121-2.

Genome sequence of "Candidatus Nitrosopumilus salaria" BD31, an ammonia-oxidizing archaeon from the San Francisco Bay estuary

Mosier AC, Allen EE, Kim M, Ferriera S, Francis CA

PMID: 22461555

Journal of bacteriology. 2012-04-01; 194.8: 2119-20.

Genome sequence of "Candidatus Nitrosoarchaeum limnia" BG20, a low-salinity ammonia-oxidizing archaeon from the San Francisco Bay estuary

Mosier AC, Allen EE, Kim M, Ferriera S, Francis CA

PMID: 22461554

BMC bioinformatics. 2012-03-19; 13.42.

Cloud BioLinux: pre-configured and on-demand bioinformatics computing for the genomics community

Krampis K, Booth T, Chapman B, Tiwari B, Bicak M, Field D, Nelson KE

PMID: 22429538