Publications

Ecology letters. 2012-01-01; 15.1: 24-33.
Migratory flyway and geographical distance are barriers to the gene flow of influenza virus among North American birds
Lam TT, Ip HS, Ghedin E, Wentworth DE, Halpin RA, Stockwell TB, Spiro DJ, Dusek RJ, Bortner JB, Hoskins J, Bales BD, Yparraguirre DR, Holmes EC
PMID: 22008513
Frontiers in plant science. 2012-01-01; 3.172.
Unleashing the genome of brassica rapa
Tang H, Lyons E
PMID: 22866056
Frontiers in microbiology. 2012-01-01; 3.375.
Influence of vitamin B auxotrophy on nitrogen metabolism in eukaryotic phytoplankton
Bertrand EM, Allen AE
PMID: 23091473
PLoS computational biology. 2012-01-01; 8.11: e1002701.
This Déjà vu feeling--analysis of multidomain protein evolution in eukaryotic genomes
Zmasek CM, Godzik A
PMID: 23166479
mBio. 2012-01-01; 3.5:
Inhibition of LpxC protects mice from resistant Acinetobacter baumannii by modulating inflammation and enhancing phagocytosis
Lin L, Tan B, Pantapalangkoor P, Ho T, Baquir B, Tomaras A, Montgomery JI, Reilly U, Barbacci EG, Hujer K, Bonomo RA, Fernandez L, Hancock RE, Adams MD, French SW, Buslon VS, Spellberg B
PMID: 23033474
PloS one. 2012-01-01; 7.5: e39315.
Evaluation of 16S rDNA-based community profiling for human microbiome research
Ward DV, Gevers D, Giannoukos G, Earl AM, Methé BA, Sodergren E, Feldgarden M, Ciulla DM, Tabbaa D, Arze C, Appelbaum E, Aird L, Anderson S, Ayvaz T, Belter E, Bihan M, Bloom T, Crabtree J, Courtney L, Carmichael L, Dooling D, Erlich RL, Farmer C, Fulton L, Fulton R, Gao H, Gill JA, Haas BJ, Hemphill L, Hall O, Hamilton SG, Hepburn TA, Lennon NJ, Joshi V, Kells C, Kovar CL, Kalra D, Li K, Lewis L, Leonard S, Muzny DM, Mardis E, Mihindukulasuriya K, Magrini V, O'Laughlin M, Pohl C, Qin X, Ross K, Ross MC, Rogers YH, Singh N, Shang Y, Wilczek-Boney K, Wortman JR, Worley KC, Youmans BP, Yooseph S, Zhou Y, Schloss PD, Wilson R, Gibbs RA, Nelson KE, Weinstock G, DeSantis TZ, Petrosino JF, Highlander SK, Birren BW
PMID: 22720093
PloS one. 2012-01-01; 7.5: e33280.
Genome stability of Lyme disease spirochetes: comparative genomics of Borrelia burgdorferi plasmids
Casjens SR, Mongodin EF, Qiu WG, Luft BJ, Schutzer SE, Gilcrease EB, Huang WM, Vujadinovic M, Aron JK, Vargas LC, Freeman S, Radune D, Weidman JF, Dimitrov GI, Khouri HM, Sosa JE, Halpin RA, Dunn JJ, Fraser CM
PMID: 22432010
Scientific reports. 2012-01-01; 2.490.
Metagenomes of Mediterranean coastal lagoons
Ghai R, Hernandez CM, Picazo A, Mizuno CM, Ininbergs K, Díez B, Valas R, Dupont CL, McMahon KD, Camacho A, Rodriguez-Valera F
PMID: 22778901
PloS one. 2012-01-01; 7.5: e30495.
Functionally stable and phylogenetically diverse microbial enrichments from microbial fuel cells during wastewater treatment
Ishii S, Suzuki S, Norden-Krichmar TM, Nealson KH, Sekiguchi Y, Gorby YA, Bretschger O
PMID: 22347379
PloS one. 2012-01-01; 7.3: e46688.
Predicting the functional effect of amino acid substitutions and indels
Choi Y, Sims GE, Murphy S, Miller JR, Chan AP
PMID: 23056405