Publications

Methods in molecular biology (Clifton, N.J.). 2012-01-01; 944.35-55.
From bacterial to microbial ecosystems (metagenomics)
Williamson SJ, Yooseph S
PMID: 22144147
PLoS computational biology. 2012-01-01; 8.6: e1002358.
Metabolic reconstruction for metagenomic data and its application to the human microbiome
Abubucker S, Segata N, Goll J, Schubert AM, Izard J, Cantarel BL, Rodriguez-Mueller B, Zucker J, Thiagarajan M, Henrissat B, White O, Kelley ST, Methé B, Schloss PD, Gevers D, Mitreva M, Huttenhower C
PMID: 22719234
PloS one. 2012-01-01; 7.3: e32911.
Novel plasmids and resistance phenotypes in Yersinia pestis: unique plasmid inventory of strain Java 9 mediates high levels of arsenic resistance
Eppinger M, Radnedge L, Andersen G, Vietri N, Severson G, Mou S, Ravel J, Worsham PL
PMID: 22479347
PLoS genetics. 2012-01-01; 8.7: e1002815.
RsfA (YbeB) proteins are conserved ribosomal silencing factors
Häuser R, Pech M, Kijek J, Yamamoto H, Titz B, Naeve F, Tovchigrechko A, Yamamoto K, Szaflarski W, Takeuchi N, Stellberger T, Diefenbacher ME, Nierhaus KH, Uetz P
PMID: 22829778
PloS one. 2012-01-01; 7.5: e30495.
Functionally stable and phylogenetically diverse microbial enrichments from microbial fuel cells during wastewater treatment
Ishii S, Suzuki S, Norden-Krichmar TM, Nealson KH, Sekiguchi Y, Gorby YA, Bretschger O
PMID: 22347379
PloS one. 2012-01-01; 7.5: e39315.
Evaluation of 16S rDNA-based community profiling for human microbiome research
Ward DV, Gevers D, Giannoukos G, Earl AM, Methé BA, Sodergren E, Feldgarden M, Ciulla DM, Tabbaa D, Arze C, Appelbaum E, Aird L, Anderson S, Ayvaz T, Belter E, Bihan M, Bloom T, Crabtree J, Courtney L, Carmichael L, Dooling D, Erlich RL, Farmer C, Fulton L, Fulton R, Gao H, Gill JA, Haas BJ, Hemphill L, Hall O, Hamilton SG, Hepburn TA, Lennon NJ, Joshi V, Kells C, Kovar CL, Kalra D, Li K, Lewis L, Leonard S, Muzny DM, Mardis E, Mihindukulasuriya K, Magrini V, O'Laughlin M, Pohl C, Qin X, Ross K, Ross MC, Rogers YH, Singh N, Shang Y, Wilczek-Boney K, Wortman JR, Worley KC, Youmans BP, Yooseph S, Zhou Y, Schloss PD, Wilson R, Gibbs RA, Nelson KE, Weinstock G, DeSantis TZ, Petrosino JF, Highlander SK, Birren BW
PMID: 22720093
Nucleic acids research. 2012-01-01; 40.Database issue: D237-41.
CharProtDB: a database of experimentally characterized protein annotations
Madupu R, Richter A, Dodson RJ, Brinkac L, Harkins D, Durkin S, Shrivastava S, Sutton G, Haft D
PMID: 22140108
Molecular ecology. 2012-01-01; 21.1: 57-70.
Evidence for genetic differentiation and variable recombination rates among Dutch populations of the opportunistic human pathogen Aspergillus fumigatus
Klaassen CH, Gibbons JG, Fedorova ND, Meis JF, Rokas A
PMID: 22106836
PloS one. 2012-01-01; 7.3: e31839.
Multifunctional adaptive NS1 mutations are selected upon human influenza virus evolution in the mouse
Forbes NE, Ping J, Dankar SK, Jia JJ, Selman M, Keleta L, Zhou Y, Brown EG
PMID: 22363747
PLoS computational biology. 2012-01-01; 8.11: e1002701.
This Déjà vu feeling--analysis of multidomain protein evolution in eukaryotic genomes
Zmasek CM, Godzik A
PMID: 23166479