Publications

Methods in molecular biology (Clifton, N.J.). 2012-01-01; 852.11-21.

Oligonucleotide assembly in yeast to produce synthetic DNA fragments

Gibson DG

PMID: 22328422

PloS one. 2012-01-01; 7.6: e29044.

A case study for large-scale human microbiome analysis using JCVI's metagenomics reports (METAREP)

Goll J, Thiagarajan M, Abubucker S, Huttenhower C, Yooseph S, Methé BA

PMID: 22719821

Journal of bacteriology. 2012-01-01; 194.2: 376-94.

A Rickettsia genome overrun by mobile genetic elements provides insight into the acquisition of genes characteristic of an obligate intracellular lifestyle

Gillespie JJ, Joardar V, Williams KP, Driscoll T, Hostetler JB, Nordberg E, Shukla M, Walenz B, Hill CA, Nene VM, Azad AF, Sobral BW, Caler E

PMID: 22056929

Nucleic acids research. 2012-01-01; 40.Database issue: D306-12.

InterPro in 2011: new developments in the family and domain prediction database

Hunter S, Jones P, Mitchell A, Apweiler R, Attwood TK, Bateman A, Bernard T, Binns D, Bork P, Burge S, de Castro E, Coggill P, Corbett M, Das U, Daugherty L, Duquenne L, Finn RD, Fraser M, Gough J, Haft D, Hulo N, Kahn D, Kelly E, Letunic I, Lonsdale D, Lopez R, Madera M, Maslen J, McAnulla C, McDowall J, McMenamin C, Mi H, Mutowo-Muellenet P, Mulder N, Natale D, Orengo C, Pesseat S, Punta M, Quinn AF, Rivoire C, Sangrador-Vegas A, Selengut JD, Sigrist CJ, Scheremetjew M, Tate J, Thimmajanarthanan M, Thomas PD, Wu CH, Yeats C, Yong SY

PMID: 22096229

Molecular ecology. 2012-01-01; 21.1: 57-70.

Evidence for genetic differentiation and variable recombination rates among Dutch populations of the opportunistic human pathogen Aspergillus fumigatus

Klaassen CH, Gibbons JG, Fedorova ND, Meis JF, Rokas A

PMID: 22106836

PloS one. 2012-01-01; 7.5: e51762.

A novel SERPINA1 mutation causing serum alpha(1)-antitrypsin deficiency

Saunders DN, Tindall EA, Shearer RF, Roberson J, Decker A, Wilson JA, Hayes VM

PMID: 23251618

Ecology letters. 2012-01-01; 15.1: 24-33.

Migratory flyway and geographical distance are barriers to the gene flow of influenza virus among North American birds

Lam TT, Ip HS, Ghedin E, Wentworth DE, Halpin RA, Stockwell TB, Spiro DJ, Dusek RJ, Bortner JB, Hoskins J, Bales BD, Yparraguirre DR, Holmes EC

PMID: 22008513

PloS one. 2012-01-01; 7.3: e46688.

Predicting the functional effect of amino acid substitutions and indels

Choi Y, Sims GE, Murphy S, Miller JR, Chan AP

PMID: 23056405

mBio. 2012-01-01; 3.5:

Inhibition of LpxC protects mice from resistant Acinetobacter baumannii by modulating inflammation and enhancing phagocytosis

Lin L, Tan B, Pantapalangkoor P, Ho T, Baquir B, Tomaras A, Montgomery JI, Reilly U, Barbacci EG, Hujer K, Bonomo RA, Fernandez L, Hancock RE, Adams MD, French SW, Buslon VS, Spellberg B

PMID: 23033474

Database : the journal of biological databases and curation. 2012-01-01; 2012.bas003.

AntiFam: a tool to help identify spurious ORFs in protein annotation

Eberhardt RY, Haft DH, Punta M, Martin M, O'Donovan C, Bateman A

PMID: 22434837