Publications

PloS one. 2012-01-01; 7.3: e34581.

Decreased serologic response in vaccinated military recruits during 2011 correspond to genetic drift in concurrent circulating pandemic A/H1N1 viruses

Faix DJ, Hawksworth AW, Myers CA, Hansen CJ, Ortiguerra RG, Halpin R, Wentworth D, Pacha LA, Schwartz EG, Garcia SM, Eick-Cost AA, Clagett CD, Khurana S, Golding H, Blair PJ

PMID: 22514639

PloS one. 2012-01-01; 7.6: e29044.

A case study for large-scale human microbiome analysis using JCVI's metagenomics reports (METAREP)

Goll J, Thiagarajan M, Abubucker S, Huttenhower C, Yooseph S, Methé BA

PMID: 22719821

PloS one. 2012-01-01; 7.5: e33604.

Transcriptional and proteomic analysis of the Aspergillus fumigatus ΔprtT protease-deficient mutant

Hagag S, Kubitschek-Barreira P, Neves GW, Amar D, Nierman W, Shalit I, Shamir R, Lopes-Bezerra L, Osherov N

PMID: 22514608

PLoS computational biology. 2012-01-01; 8.6: e1002358.

Metabolic reconstruction for metagenomic data and its application to the human microbiome

Abubucker S, Segata N, Goll J, Schubert AM, Izard J, Cantarel BL, Rodriguez-Mueller B, Zucker J, Thiagarajan M, Henrissat B, White O, Kelley ST, Methé B, Schloss PD, Gevers D, Mitreva M, Huttenhower C

PMID: 22719234

PloS one. 2012-01-01; 7.5: e32118.

Analyses of the microbial diversity across the human microbiome

Li K, Bihan M, Yooseph S, Methé BA

PMID: 22719823

PLoS genetics. 2012-01-01; 8.7: e1002815.

RsfA (YbeB) proteins are conserved ribosomal silencing factors

Häuser R, Pech M, Kijek J, Yamamoto H, Titz B, Naeve F, Tovchigrechko A, Yamamoto K, Szaflarski W, Takeuchi N, Stellberger T, Diefenbacher ME, Nierhaus KH, Uetz P

PMID: 22829778

Journal of bacteriology. 2012-01-01; 194.2: 376-94.

A Rickettsia genome overrun by mobile genetic elements provides insight into the acquisition of genes characteristic of an obligate intracellular lifestyle

Gillespie JJ, Joardar V, Williams KP, Driscoll T, Hostetler JB, Nordberg E, Shukla M, Walenz B, Hill CA, Nene VM, Azad AF, Sobral BW, Caler E

PMID: 22056929

PLoS computational biology. 2012-01-01; 8.11: e1002701.

This Déjà vu feeling--analysis of multidomain protein evolution in eukaryotic genomes

Zmasek CM, Godzik A

PMID: 23166479

Current chemical genomics. 2012-01-01; 6.8-17.

The HaloTag: Improving Soluble Expression and Applications in Protein Functional Analysis

N Peterson S, Kwon K

PMID: 23115610

PloS one. 2012-01-01; 7.5: e41294.

The "most wanted" taxa from the human microbiome for whole genome sequencing

Fodor AA, DeSantis TZ, Wylie KM, Badger JH, Ye Y, Hepburn T, Hu P, Sodergren E, Liolios K, Huot-Creasy H, Birren BW, Earl AM

PMID: 22848458