Publications

PloS one. 2012-01-01; 7.3: e46688.

Predicting the functional effect of amino acid substitutions and indels

Choi Y, Sims GE, Murphy S, Miller JR, Chan AP

PMID: 23056405

Methods in molecular biology (Clifton, N.J.). 2012-01-01; 944.35-55.

From bacterial to microbial ecosystems (metagenomics)

Williamson SJ, Yooseph S

PMID: 22144147

Molecular biology and evolution. 2012-01-01; 29.1: 367-79.

Evolution and functional diversification of fructose bisphosphate aldolase genes in photosynthetic marine diatoms

Allen AE, Moustafa A, Montsant A, Eckert A, Kroth PG, Bowler C

PMID: 21903677

Nucleic acids research. 2012-01-01; 40.Database issue: D237-41.

CharProtDB: a database of experimentally characterized protein annotations

Madupu R, Richter A, Dodson RJ, Brinkac L, Harkins D, Durkin S, Shrivastava S, Sutton G, Haft D

PMID: 22140108

PloS one. 2012-01-01; 7.5: e29879.

Innate immune response of human alveolar macrophages during influenza A infection

Wang J, Nikrad MP, Travanty EA, Zhou B, Phang T, Gao B, Alford T, Ito Y, Nahreini P, Hartshorn K, Wentworth D, Dinarello CA, Mason RJ

PMID: 22396727

PloS one. 2012-01-01; 7.5: e36427.

Optimizing read mapping to reference genomes to determine composition and species prevalence in microbial communities

Martin J, Sykes S, Young S, Kota K, Sanka R, Sheth N, Orvis J, Sodergren E, Wang Z, Weinstock GM, Mitreva M

PMID: 22719831

Ecology letters. 2012-01-01; 15.1: 24-33.

Migratory flyway and geographical distance are barriers to the gene flow of influenza virus among North American birds

Lam TT, Ip HS, Ghedin E, Wentworth DE, Halpin RA, Stockwell TB, Spiro DJ, Dusek RJ, Bortner JB, Hoskins J, Bales BD, Yparraguirre DR, Holmes EC

PMID: 22008513

Molecular ecology. 2012-01-01; 21.1: 57-70.

Evidence for genetic differentiation and variable recombination rates among Dutch populations of the opportunistic human pathogen Aspergillus fumigatus

Klaassen CH, Gibbons JG, Fedorova ND, Meis JF, Rokas A

PMID: 22106836

Frontiers in plant science. 2012-01-01; 3.172.

Unleashing the genome of brassica rapa

Tang H, Lyons E

PMID: 22866056

PloS one. 2012-01-01; 7.5: e51762.

A novel SERPINA1 mutation causing serum alpha(1)-antitrypsin deficiency

Saunders DN, Tindall EA, Shearer RF, Roberson J, Decker A, Wilson JA, Hayes VM

PMID: 23251618