Publications

Nature. 2008-10-09; 455.7214: 757-63.
Comparative genomics of the neglected human malaria parasite Plasmodium vivax
Carlton JM, Adams JH, Silva JC, Bidwell SL, Lorenzi H, Caler E, Crabtree J, Angiuoli SV, Merino EF, Amedeo P, Cheng Q, Coulson RM, Crabb BS, Del Portillo HA, Essien K, Feldblyum TV, Fernandez-Becerra C, Gilson PR, Gueye AH, Guo X, Kang'a S, Kooij TW, Korsinczky M, Meyer EV, Nene V, Paulsen I, White O, Ralph SA, Ren Q, Sargeant TJ, Salzberg SL, Stoeckert CJ, Sullivan SA, Yamamoto MM, Hoffman SL, Wortman JR, Gardner MJ, Galinski MR, Barnwell JW, Fraser-Liggett CM
PMID: 18843361
PLoS genetics. 2008-10-03; 4.10: e1000211.
High-throughput phenotypic characterization of Pseudomonas aeruginosa membrane transport genes
Johnson DA, Tetu SG, Phillippy K, Chen J, Ren Q, Paulsen IT
PMID: 18833300
Cytometry. Part A : the journal of the International Society for Analytical Cytology. 2008-10-01; 73.10: 926-30.
MIFlowCyt: the minimum information about a Flow Cytometry Experiment
Lee JA, Spidlen J, Boyce K, Cai J, Crosbie N, Dalphin M, Furlong J, Gasparetto M, Goldberg M, Goralczyk EM, Hyun B, Jansen K, Kollmann T, Kong M, Leif R, McWeeney S, Moloshok TD, Moore W, Nolan G, Nolan J, Nikolich-Zugich J, Parrish D, Purcell B, Qian Y, Selvaraj B, Smith C, Tchuvatkina O, Wertheimer A, Wilkinson P, Wilson C, Wood J, Zigon R, International Society for Advancement of Cytometry Data Standards Task Force, Scheuermann RH, Brinkman RR
PMID: 18752282
Antimicrobial agents and chemotherapy. 2008-10-01; 52.10: 3604-11.
RamA confers multidrug resistance in Salmonella enterica via increased expression of acrB, which is inhibited by chlorpromazine
Bailey AM, Paulsen IT, Piddock LJ
PMID: 18694955
Journal of bacteriology. 2008-10-01; 190.20: 6779-94.
Insights into the environmental resistance gene pool from the genome sequence of the multidrug-resistant environmental isolate Escherichia coli SMS-3-5
Fricke WF, Wright MS, Lindell AH, Harkins DM, Baker-Austin C, Ravel J, Stepanauskas R
PMID: 18708504
Nature biotechnology. 2008-10-01; 26.10: 1161-8.
Genome sequencing and analysis of the filamentous fungus Penicillium chrysogenum
van den Berg MA, Albang R, Albermann K, Badger JH, Daran JM, Driessen AJ, Garcia-Estrada C, Fedorova ND, Harris DM, Heijne WH, Joardar V, Kiel JA, Kovalchuk A, Martín JF, Nierman WC, Nijland JG, Pronk JT, Roubos JA, van der Klei IJ, van Peij NN, Veenhuis M, von Döhren H, Wagner C, Wortman J, Bovenberg RA
PMID: 18820685
Journal of bacteriology. 2008-10-01; 190.20: 6881-93.
The pangenome structure of Escherichia coli: comparative genomic analysis of E. coli commensal and pathogenic isolates
Rasko DA, Rosovitz MJ, Myers GS, Mongodin EF, Fricke WF, Gajer P, Crabtree J, Sebaihia M, Thomson NR, Chaudhuri R, Henderson IR, Sperandio V, Ravel J
PMID: 18676672
Molecular microbiology. 2008-10-01; 70.1: 27-43.
SreA-mediated iron regulation in Aspergillus fumigatus
Schrettl M, Kim HS, Eisendle M, Kragl C, Nierman WC, Heinekamp T, Werner ER, Jacobsen I, Illmer P, Yi H, Brakhage AA, Haas H
PMID: 18721228
Applied and environmental microbiology. 2008-10-01; 74.20: 6447-51.
Extensive genome rearrangements and multiple horizontal gene transfers in a population of pyrococcus isolates from Vulcano Island, Italy
White JR, Escobar-Paramo P, Mongodin EF, Nelson KE, DiRuggiero J
PMID: 18723649
Molecular genetics and genomics : MGG. 2008-10-01; 280.4: 287-92.
Pilot sequencing of onion genomic DNA reveals fragments of transposable elements, low gene densities, and significant gene enrichment after methyl filtration
Jakse J, Meyer JD, Suzuki G, McCallum J, Cheung F, Town CD, Havey MJ
PMID: 18615255